6DE6 | pdb_00006de6

2.1 A resolution structure of histamine dehydrogenase from Rhizobium sp. 4-9


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AOxidored_FMNe6de6A1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Oxidored_FMNECOD (1.6)
Amycofact_OYE_2e6de6A3 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: mycofact_OYE_2ECOD (1.6)
AAmino_oxidase_1ste6de6A2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Nucleotide-binding domainF: Amino_oxidase_1stECOD (1.6)
BOxidored_FMNe6de6B3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Oxidored_FMNECOD (1.6)
Bmycofact_OYE_2e6de6B4 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: mycofact_OYE_2ECOD (1.6)
BAmino_oxidase_1ste6de6B2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Nucleotide-binding domainF: Amino_oxidase_1stECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (utative)
A3.50.50.60 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain FAD/NAD(P)-binding domainCATH (utative)
B3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00724NADH:flavin oxidoreductase / NADH oxidase family (Oxidored_FMN)NADH:flavin oxidoreductase / NADH oxidase familyDomain
A, B
PF22620OYE-like second alpha/beta domain (OYE-like_second_a-b)OYE-like second alpha/beta domainThis domain is found in a group of diverse dehydrogenases from the old yellow enzyme (OYE)-like family, such as histamine dehydrogenase from Nocardioides simplex, trimethylamine dehydrogenase from Methylophilus methylotrophus (sp. W(3)A(1)) and 2-nap ...This domain is found in a group of diverse dehydrogenases from the old yellow enzyme (OYE)-like family, such as histamine dehydrogenase from Nocardioides simplex, trimethylamine dehydrogenase from Methylophilus methylotrophus (sp. W(3)A(1)) and 2-naphthoyl-CoA reductase (NCR) [1-4], which has been described as a small, second alpha/beta domain [3,4].
Domain
A, B
PF13450NAD(P)-binding Rossmann-like domain (NAD_binding_8)NAD(P)-binding Rossmann-like domainDomain