6EJP | pdb_00006ejp

Yersinia YscU C-terminal fragment in complex with a synthetic compound

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Bac_export_2	e6ejpD1	A: beta sandwiches	X: EscU C-terminal domain-like (From Topology)	H: EscU C-terminal domain-like (From Topology)	T: EscU C-terminal domain-like	F: Bac_export_2	ECOD (1.6)
B [auth C]	Bac_export_2	e6ejpC1	A: beta sandwiches	X: EscU C-terminal domain-like (From Topology)	H: EscU C-terminal domain-like (From Topology)	T: EscU C-terminal domain-like	F: Bac_export_2	ECOD (1.6)
C [auth B]	UNK_F_TYPE	e6ejpB1	A: beta sandwiches	X: EscU C-terminal domain-like (From Topology)	H: EscU C-terminal domain-like (From Topology)	T: EscU C-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6ejpA1	A: beta sandwiches	X: EscU C-terminal domain-like (From Topology)	H: EscU C-terminal domain-like (From Topology)	T: EscU C-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.1690.10	Alpha Beta	3-Layer(aba) Sandwich	name from scop	secretion proteins EscU	CATH (4.3.0)
B [auth C]	3.40.1690.10	Alpha Beta	3-Layer(aba) Sandwich	name from scop	secretion proteins EscU	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth C], D	Yop proteins translocation protein U	-	establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane
A, C [auth B]	Yop proteins translocation protein U	-	establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C], D	IPR006135	Type III secretion system substrate exporter	Family
B [auth C], D	IPR006307	Type III exporter system, secretion apparatus protein BsaZ-like	Family
B [auth C], D	IPR029025	Type III secretion system substrate exporter, C-terminal	Homologous Superfamily
A, C [auth B]	IPR006135	Type III secretion system substrate exporter	Family
A, C [auth B]	IPR006307	Type III exporter system, secretion apparatus protein BsaZ-like	Family
A, C [auth B]	IPR029025	Type III secretion system substrate exporter, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.