6FP6 | pdb_00006fp6

Complex of human Cu,Zn SOD1 with the human copper chaperone for SOD1 in a compact conformation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Vd6fp6v_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Copper chaperone for superoxide dismutase, C-terminal domain Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad6fp6a_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd6fp6c_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed6fp6e_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id6fp6i_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd6fp6k_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Md6fp6m_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Od6fp6o_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Qd6fp6q_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Sd6fp6s_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ud6fp6u_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Wd6fp6w_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd6fp6g_ All beta proteins Immunoglobulin-like beta-sandwich Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase-like Cu,Zn superoxide dismutase, SOD Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055277 3002059 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)
USCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCu, Zn superoxide dismutase-like 8055253 3002059 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BSod_Cue6fp6B1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
BHMA_1e6fp6B2 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMA_1ECOD (1.6)
DSod_Cue6fp6D1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
DHMA_1e6fp6D2 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMA_1ECOD (1.6)
FSod_Cue6fp6F1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
FHMA_1e6fp6F2 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMA_1ECOD (1.6)
HSod_Cue6fp6H1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
HHMA_1e6fp6H2 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMA_1ECOD (1.6)
JSod_Cue6fp6J1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
JHMA_1e6fp6J2 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMA_1ECOD (1.6)
LSod_Cue6fp6L1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
LHMA_1e6fp6L2 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMA_1ECOD (1.6)
PSod_Cue6fp6P1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
PHMA_1e6fp6P2 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMA_1ECOD (1.6)
RSod_Cue6fp6R1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
RHMA_1e6fp6R2 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMA_1ECOD (1.6)
TSod_Cue6fp6T1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
THMA_1e6fp6T2 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMA_1ECOD (1.6)
VSod_Cue6fp6V1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
XSod_Cue6fp6X1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
XHMA_1e6fp6X2 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMA_1ECOD (1.6)
NSod_Cue6fp6N1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
NHMA_1e6fp6N2 A: a+b two layersX: Alpha-beta plaitsH: HMA-relatedT: HMA, heavy metal-associated domainF: HMA_1ECOD (1.6)
ASod_Cue6fp6A1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
CSod_Cue6fp6C1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
ESod_Cue6fp6E1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
ISod_Cue6fp6I1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
KSod_Cue6fp6K1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
MSod_Cue6fp6M1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
OSod_Cue6fp6O1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
QSod_Cue6fp6Q1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
SSod_Cue6fp6S1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
USod_Cue6fp6U1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
WSod_Cue6fp6W1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)
GSod_Cue6fp6G1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: Sod_CuECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
B2.60.40.200 Mainly Beta Sandwich Immunoglobulin-like Superoxide dismutase, copper/zinc binding domainCATH (utative)
D2.60.40.200 Mainly Beta Sandwich Immunoglobulin-like Superoxide dismutase, copper/zinc binding domainCATH (utative)
F3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
F2.60.40.200 Mainly Beta Sandwich Immunoglobulin-like Superoxide dismutase, copper/zinc binding domainCATH (utative)
H3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
H2.60.40.200 Mainly Beta Sandwich Immunoglobulin-like Superoxide dismutase, copper/zinc binding domainCATH (utative)
J3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
J2.60.40.200 Mainly Beta Sandwich Immunoglobulin-like Superoxide dismutase, copper/zinc binding domainCATH (utative)
L3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
L2.60.40.200 Mainly Beta Sandwich Immunoglobulin-like Superoxide dismutase, copper/zinc binding domainCATH (utative)
P3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
P2.60.40.200 Mainly Beta Sandwich Immunoglobulin-like Superoxide dismutase, copper/zinc binding domainCATH (utative)
R3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
R2.60.40.200 Mainly Beta Sandwich Immunoglobulin-like Superoxide dismutase, copper/zinc binding domainCATH (utative)
T3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
T2.60.40.200 Mainly Beta Sandwich Immunoglobulin-like Superoxide dismutase, copper/zinc binding domainCATH (utative)
X3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
X2.60.40.200 Mainly Beta Sandwich Immunoglobulin-like Superoxide dismutase, copper/zinc binding domainCATH (utative)
N3.30.70.100 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
N2.60.40.200 Mainly Beta Sandwich Immunoglobulin-like Superoxide dismutase, copper/zinc binding domainCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D, F, H, J
PF00403Heavy-metal-associated domain (HMA)Heavy-metal-associated domainDomain
B, D, F, H, J
PF00080Copper/zinc superoxide dismutase (SODC) (Sod_Cu)Copper/zinc superoxide dismutase (SODC)superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD ...superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.
Domain
A, C, E, G, I
PF00080Copper/zinc superoxide dismutase (SODC) (Sod_Cu)Copper/zinc superoxide dismutase (SODC)superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD ...superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D, F, H, J
Copper chaperone for superoxide dismutase
A, C, E, G, I
Superoxide dismutase [Cu-Zn]

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B, D, F, H, J
PharosO14618
A, C, E, G, I
PharosP00441