6KY4 | pdb_00006ky4

Crystal structure of Sulfiredoxin from Arabidopsis thaliana


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilySulfiredoxin-like 8100141 4001737 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyParB/Sulfiredoxin 8100142 3001301 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AParBce6ky4A1 A: a+b complex topologyX: ParB/Sulfiredoxin (From Topology)H: ParB/Sulfiredoxin (From Topology)T: ParB/SulfiredoxinF: ParBcECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02195ParB N-terminal domain (ParB_N)ParB N-terminal domainThis entry describes the N-terminal domain of ParB proteins, predominantly found in bacteria. This domain is characterised by a highly conserved arginine motif, RRXR, known as the arginine patch, which is crucial for ParB DNA binding activity [1-2]. ...This entry describes the N-terminal domain of ParB proteins, predominantly found in bacteria. This domain is characterised by a highly conserved arginine motif, RRXR, known as the arginine patch, which is crucial for ParB DNA binding activity [1-2]. ParB plays a vital role in chromosome partitioning and nucleoid occlusion. These proteins are essential for ensuring proper chromosome segregation during cell division by binding to the DNA origin of replication and localising to both poles of the predivisional cell following DNA replication. ParB comprises three highly conserved domains: an N-terminal nucleotide-binding domain (NBD), a central helix-turn-helix (HTH) parS-binding domain, a non-structured linker region, and a C-terminal dimerisation domain that tightly links the two subunits of the ParB dimer [3]. ParB proteins share significant sequence and structural similarity with Sulfiredoxin (Srx), a sulfinic acid reductase identified in eukaryotes. Sequence comparison and phylogenetic analysis of the Srx and ParB protein families suggest that Srx evolved via truncation of ParB, resulting in the removal of the entire C-terminal half of the protein including the HTH domain [4].
Domain

InterPro: Protein Family Classification InterPro Database Homepage