6MS4 | pdb_00006ms4

Crystal structure of the DENR-MCT-1 complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BUNK_F_TYPEe6ms4B1 A: few secondary structure elementsX: Zinc-binding domain of DENR (From Topology)H: Zinc-binding domain of DENR (From Topology)T: Zinc-binding domain of DENRF: UNK_F_TYPEECOD (1.6)
APUAe6ms4A2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PUA domainF: PUAECOD (1.6)
AMCT1_Ne6ms4A1 A: a+b two layersX: Cystatin-likeH: Pre-PUA domain (From Topology)T: Pre-PUA domainF: MCT1_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.10.400.20 Alpha Beta Roll Sulfate adenylyltransferase CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21023DENR, N-terminal (DENR_N)DENR, N-terminalThe density regulated protein (DENR) forms a stable heterodimer with malignant T-cell-amplified sequence 1 (MCT-1) which interacts with the 40S ribosomal subunit during initiation, reinitiation and recycling stages, playing a role in regulation of no ...The density regulated protein (DENR) forms a stable heterodimer with malignant T-cell-amplified sequence 1 (MCT-1) which interacts with the 40S ribosomal subunit during initiation, reinitiation and recycling stages, playing a role in regulation of non-canonical translation initiation and ribosomal recycling [1]. This entry represents the N-terminal domain of DENR, containing a zinc ion-binding site, which preserves the structure of DENR's MCT-1-binding interface that is essential for the dimerization [1-3]. DENR likely coordinates the Zn ion mainly via three rather than four cysteines [3].
Domain
PF17832Pre-PUA-like domain (Pre-PUA)Pre-PUA-like domainThis Pre-PUA-like domain is found in a wide variety of proteins including Swiss:Q61211. the eukaryotic translation initiation factor 2D, where it is found at the N-terminus. Domain
PF01472PUA domain (PUA)PUA domainThe PUA domain named after Pseudouridine synthase and Archaeosine transglycosylase, was detected in archaeal and eukaryotic pseudouridine synthases, archaeal archaeosine synthases, a family of predicted ATPases that may be involved in RNA modificatio ...The PUA domain named after Pseudouridine synthase and Archaeosine transglycosylase, was detected in archaeal and eukaryotic pseudouridine synthases, archaeal archaeosine synthases, a family of predicted ATPases that may be involved in RNA modification, a family of predicted archaeal and bacterial rRNA methylases. Additionally, the PUA domain was detected in a family of eukaryotic proteins that also contain a domain homologous to the translation initiation factor eIF1/SUI1; these proteins may comprise a novel type of translation factors. Unexpectedly, the PUA domain was detected also in bacterial and yeast glutamate kinases; this is compatible with the demonstrated role of these enzymes in the regulation of the expression of other genes [1]. It is predicted that the PUA domain is an RNA binding domain.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Density-regulated protein
Malignant T-cell-amplified sequence 1