6RXX | pdb_00006rxx

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state C, Poly-Ala


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth UA]SCOP2B SuperfamilyUTPB complex component-like 8056020 3002330 SCOP2B (2022-06-29)
J [auth UU]SCOP2B SuperfamilyUTPB complex component-like 8056021 3002330 SCOP2B (2022-06-29)
M [auth CK]SCOP2B SuperfamilyClass II aaRS ABD-related 8095989 3000465 SCOP2B (2022-06-29)
M [auth CK]SCOP2B SuperfamilyClass II aaRS ABD-related 8095988 3000465 SCOP2B (2022-06-29)
P [auth CN]SCOP2B Superfamilyalpha/beta knot 8094639 3001122 SCOP2B (2022-06-29)
Q [auth CO]SCOP2B Superfamilyalpha/beta knot 8094639 3001122 SCOP2B (2022-06-29)
T [auth Ca]SCOP2 FamilyRibosomal S3Ae 8094666 4006095 SCOP2 (2022-06-29)
T [auth Ca]SCOP2 SuperfamilyRibosomal S3Ae-like 8094667 3002166 SCOP2 (2022-06-29)
U [auth Cc]SCOP2B SuperfamilyRibosomal protein S7 8095683 3000799 SCOP2B (2022-06-29)
Y [auth Ci]SCOP2B SuperfamilyTranslational machinery components 8095757 3000571 SCOP2B (2022-06-29)
Z [auth Cj]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8097794 3000100 SCOP2B (2022-06-29)
AA [auth Cm]SCOP2B SuperfamilyRibosomal protein S8 8095563 3000709 SCOP2B (2022-06-29)
CA [auth Cp]SCOP2B SuperfamilyNucleic acid-binding proteins 8095187 3000135 SCOP2B (2022-06-29)
RA [auth Co]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8098446 3000210 SCOP2B (2022-06-29)
GB [auth CA]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8065682 3000118 SCOP2B (2022-06-29)
HB [auth CB]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8065682 3000118 SCOP2B (2022-06-29)
LB [auth CF]SCOP2B SuperfamilyL30e-like 8063954 3001739 SCOP2B (2022-06-29)
KB [auth CE]SCOP2B SuperfamilyL30e-like 8063954 3001739 SCOP2B (2022-06-29)
F [auth UL]SCOP2B SuperfamilyUTPB complex component-like 8056019 3002330 SCOP2B (2022-06-29)
PB [auth Cr]SCOP2 FamilyRps19E-like 8095684 4000222 SCOP2 (2022-06-29)
PB [auth Cr]SCOP2 SuperfamilyWinged helix DNA-binding domain 8095685 3000034 SCOP2 (2022-06-29)
G [auth UM]SCOP2B SuperfamilyUTPB complex component-like 8056022 3002330 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth UA]ANAPC4_WD40_6e6rxxUA3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
A [auth UA]ANAPC4_WD40_4e6rxxUA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
A [auth UA]Utp12e6rxxUA2 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: Utp12ECOD (1.6)
J [auth UU]ANAPC4_WD40_9e6rxxUU1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_9ECOD (1.6)
J [auth UU]Utp21e6rxxUU2 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: Utp21ECOD (1.6)
L [auth CJ]S4e6rxxCJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
P [auth CN]EMG1e6rxxCN1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: EMG1ECOD (1.6)
Q [auth CO]EMG1e6rxxCO1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: EMG1ECOD (1.6)
R [auth CP]KOG3273e6rxxCP2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: KOG3273ECOD (1.6)
R [auth CP]KOG2874e6rxxCP1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: KOG2874ECOD (1.6)
S [auth CQ]KH_1e6rxxCQ2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: KH_1ECOD (1.6)
S [auth CQ]KOG3273e6rxxCQ1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: KOG3273ECOD (1.6)
T [auth Ca]Ribosomal_S3Ae_Ne6rxxCa2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
T [auth Ca]Ribosomal_S3Ae_Ce6rxxCa1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
U [auth Cc]Ribosomal_S7_1e6rxxCc1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
V [auth Ce]Ribosomal_S7e_Ce6rxxCe2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_CECOD (1.6)
V [auth Ce]Ribosomal_S7e_Ne6rxxCe1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
W [auth Cg]S4e6rxxCg1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
X [auth Ch]Ribosomal_S13_Ne6rxxCh2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
X [auth Ch]Ribosomal_S15_2e6rxxCh1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
Y [auth Ci]Ribosomal_S11e6rxxCi1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
Z [auth Cj]Ribosomal_S9e6rxxCj1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
AA [auth Cm]Ribosomal_S8_N_1e6rxxCm1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
AA [auth Cm]Ribosomal_S8_C_1e6rxxCm2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
BA [auth Cn]Ribosom_S12_S23e6rxxCn1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
CA [auth Cp]Ribosomal_S28ee6rxxCp1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
DA [auth Cq]Ribosomal_S27ee6rxxCq1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
C [auth UF]TPR_11_6e6rxxUF1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_6ECOD (1.6)
GA [auth UV]Nrap_D2e6rxxUV3 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Nrap_D2ECOD (1.6)
GA [auth UV]Nrap_D5e6rxxUV5 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Nrap_D5ECOD (1.6)
GA [auth UV]Nrap_D3e6rxxUV6 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: Nrap_D3ECOD (1.6)
GA [auth UV]UNK_F_TYPEe6rxxUV1 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: UNK_F_TYPEECOD (1.6)
GA [auth UV]Nrape6rxxUV2 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: NrapECOD (1.6)
GA [auth UV]Nrap_D4e6rxxUV4 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: Nrap_D4ECOD (1.6)
HA [auth CV]KOG4008,Peripla_BP_4_Ce6rxxCV1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: KOG4008,Peripla_BP_4_CECOD (1.6)
IA [auth Cl]Ribosomal_S13e6rxxCl1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
JA [auth CH]RTCe6rxxCH2 A: a+b two layersX: IF3-likeH: EPT/RTPC-like (From Topology)T: EPT/RTPC-likeF: RTCECOD (1.6)
JA [auth CH]RTC_inserte6rxxCH1 A: a+b three layersX: Thioredoxin-likeH: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology)T: RNA 3'-terminal phosphate cyclase, RPTC, insert domainF: RTC_insertECOD (1.6)
LA [auth CR]tRNA_bind_2e6rxxCR4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: tRNA_bind_2ECOD (1.6)
LA [auth CR]GNAT_acetyltr_2e6rxxCR1 A: a+b three layersX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat) (From Topology)T: Acyl-CoA N-acyltransferases (Nat)F: GNAT_acetyltr_2ECOD (1.6)
LA [auth CR]DUF1726e6rxxCR2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DUF1726ECOD (1.6)
LA [auth CR]Helicase_RecDe6rxxCR3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Helicase_RecDECOD (1.6)
MA [auth CS]tRNA_bind_2e6rxxCS4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: tRNA_bind_2ECOD (1.6)
MA [auth CS]GNAT_acetyltr_2e6rxxCS1 A: a+b three layersX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat) (From Topology)T: Acyl-CoA N-acyltransferases (Nat)F: GNAT_acetyltr_2ECOD (1.6)
MA [auth CS]DUF1726e6rxxCS2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DUF1726ECOD (1.6)
MA [auth CS]Helicase_RecDe6rxxCS3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Helicase_RecDECOD (1.6)
NA [auth Cb]Ribosomal_S4ee6rxxCb3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
NA [auth Cb]40S_S4_Ce6rxxCb1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
NA [auth Cb]RS4NTe6rxxCb2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
OA [auth Cd]Ribosomal_S6ee6rxxCd1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
PA [auth Cf]Ribosomal_S8ee6rxxCf1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
QA [auth Ck]Ribosomal_S17_1e6rxxCk1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
RA [auth Co]Ribosomal_S24ee6rxxCo1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
SA [auth CW]ANAPC4_WD40_5e6rxxCW1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_5ECOD (1.6)
TA [auth UT]IBN_Ne6rxxUT1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: IBN_NECOD (1.6)
WA [auth UD]ANAPC4_WD40_9e6rxxUD1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_9ECOD (1.6)
WA [auth UD]ANAPC4_WD40_4e6rxxUD2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
XA [auth UJ]F_UNCLASSIFIEDe6rxxUJ2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
XA [auth UJ]BP28CTe6rxxUJ3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: BP28CTECOD (1.6)
ZA [auth UQ]ANAPC4_WD40_1e6rxxUQ1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_1ECOD (1.6)
AB [auth CX]Bystine6rxxCX1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: BystinECOD (1.6)
BB [auth UI]UNK_F_TYPEe6rxxUI1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: UNK_F_TYPEECOD (1.6)
EB [auth UE]UNK_F_TYPEe6rxxUE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: UNK_F_TYPEECOD (1.6)
GB [auth CA]Fibrillarine6rxxCA1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: FibrillarinECOD (1.6)
HB [auth CB]Fibrillarine6rxxCB1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: FibrillarinECOD (1.6)
IB [auth CC]Nop_Ce6rxxCC1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: Nop C-terminal domainF: Nop_CECOD (1.6)
IB [auth CC]Nop_Ne6rxxCC2 A: alpha complex topologyX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: Nop_NECOD (1.6)
IB [auth CC]NOP5NTe6rxxCC3 A: mixed a+b and a/bX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: NOP5NTECOD (1.6)
LB [auth CF]Ribosomal_L7Ae_1e6rxxCF1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
KB [auth CE]Ribosomal_L7Ae_1e6rxxCE1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
F [auth UL]ANAPC4_WD40_2e6rxxUL3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_2ECOD (1.6)
F [auth UL]ANAPC4_WD40_14e6rxxUL1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_14ECOD (1.6)
F [auth UL]Utp12e6rxxUL2 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: Utp12ECOD (1.6)
MB [auth CG]ANAPC4_WD40_7e6rxxCG1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_7ECOD (1.6)
PB [auth Cr]Ribosomal_S19ee6rxxCr1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
G [auth UM]ANAPC4_WD40_7e6rxxUM3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_7ECOD (1.6)
G [auth UM]ANAPC4_WD40_10e6rxxUM2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
G [auth UM]Utp13e6rxxUM1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: Utp13ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth UA]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
A [auth UA]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
J [auth UU]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
L [auth CJ]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
L [auth CJ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
L [auth CJ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
M [auth CK]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
M [auth CK]PF04427Brix domain (Brix)Brix domainDomain
N [auth CL]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
O [auth CM]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
O [auth CM]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
O [auth CM]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
P [auth CN],
Q [auth CO]
PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
R [auth CP]PF17903Krr1 KH1 domain (KH_KRR1_1st)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1]. Domain
R [auth CP]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
R [auth CP]PF21800KRR1 small subunit processome component, second KH domain (KH_KRR1_2nd)KRR1 small subunit processome component, second KH domainThis is the second K homology domain (KH2) found in KRR1 small subunit processome component from the fungus Chaetomium thermophilum and similar eukaryotic sequences. Domain
S [auth CQ]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
S [auth CQ]PF22891Eukaryotic type KH-domain (KH-domain type I) (327.11.2) (KH_PNO1_2nd)Eukaryotic type KH-domain (KH-domain type I) (327.11.2)This entry represents the second KH domain found in the PNO1 protein. PNO1 is part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. Domain
C [auth UF]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Repeat
GA [auth UV]PF03813Nrap protein domain 1 (Nrap)Nrap protein domain 1Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1]. This domain has a nucleotidyltransferase structure.
Domain
GA [auth UV]PF17403Nrap protein PAP/OAS-like domain (Nrap_D2)Nrap protein PAP/OAS-like domainMembers of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
GA [auth UV]PF17406Nrap protein PAP/OAS1-like domain 5 (Nrap_D5)Nrap protein PAP/OAS1-like domain 5Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
GA [auth UV]PF17407Nrap protein domain 6 (Nrap_D6)Nrap protein domain 6Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
GA [auth UV]PF17404Nrap protein domain 3 (Nrap_D3)Nrap protein domain 3Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
GA [auth UV]PF17405Nrap protein nucleotidyltransferase domain 4 (Nrap_D4)Nrap protein nucleotidyltransferase domain 4Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
HA [auth CV]PF12923Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain (RRP7)Ribosomal RNA-processing protein 7 (RRP7) C-terminal domainRRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly [1]. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [1-2]. Domain
JA [auth CH]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
JA [auth CH]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
JA [auth CH]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
KA [auth CI]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1]. Domain
KA [auth CI]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
LA [auth CR],
MA [auth CS]
PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
LA [auth CR],
MA [auth CS]
PF13725Possible tRNA binding domain (tRNA_bind_2)Possible tRNA binding domain- Family
LA [auth CR],
MA [auth CS]
PF08351tRNA(Met) cytidine acetyltransferase TmcA, N-terminal (TmcA_N)tRNA(Met) cytidine acetyltransferase TmcA, N-terminalThis domain of unknown function is often found at the N-terminus of the bacterial tRNA(Met) cytidine acetyltransferase TmcA. TmcA catalyses the formation of N(4)-acetylcytidine (ac4C) at the wobble position of tRNA(Met) by using acetyl-CoA as an acet ...This domain of unknown function is often found at the N-terminus of the bacterial tRNA(Met) cytidine acetyltransferase TmcA. TmcA catalyses the formation of N(4)-acetylcytidine (ac4C) at the wobble position of tRNA(Met) by using acetyl-CoA as an acetyl donor and either ATP or GTP [1,2,5]. This modification is thought to ensure precise recognition of the AUG codon by strengthening C-G base-pair interaction and also prevent misrecognition of the near cognate AUA codon [1]. This domain is also found in mammalian N-acetyltransferase 10 (NAT10) and fungal protein Kre33. Kre33 and NAT10 are RNA cytosine acetyltransferases with specificity toward both 18S rRNA and tRNAs and contain additional putative nuclear and nucleolar localization signals (NLS and NoLS respectively) [3,4,5].
Domain
LA [auth CR],
MA [auth CS]
PF13718GNAT acetyltransferase 2 (GNAT_acetyltr_2)GNAT acetyltransferase 2- Family
LA [auth CR],
MA [auth CS]
PF05127RNA cytidine acetyltransferase NAT10/TcmA, helicase domain (NAT10_TcmA_helicase)RNA cytidine acetyltransferase NAT10/TcmA, helicase domainThis domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 ca ...This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 catalyses the formation of N4-acetylcytidine (ac4C) modification on mRNAs, 18S rRNA and tRNAs [1-4]. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble base to the active centre of the GCN5-related N-acetyltransferase (GNAT) domain [1].
Domain
D [auth UG]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domain- Repeat
D [auth UG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
TA [auth UT]PF20416U3 small nucleolar RNA-associated protein 20 domain (UTP20)U3 small nucleolar RNA-associated protein 20 domain- Repeat
TA [auth UT]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminal- Repeat
VA [auth UB]PF04147Nop14-like family (Nop14)Nop14-like family- Family
WA [auth UD]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
XA [auth UJ]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
YA [auth UO]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
YA [auth UO]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E [auth UK]PF03998Utp11 protein (Utp11)Utp11 protein- Family
ZA [auth UQ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
BB [auth UI],
EB [auth UE]
PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
FB [auth US]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
GB [auth CA],
HB [auth CB]
PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
GB [auth CA],
HB [auth CB]
PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
GB [auth CA],
HB [auth CB]
PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
GB [auth CA],
HB [auth CB]
PF01269Fibrillarin (Fibrillarin)FibrillarinDomain
GB [auth CA],
HB [auth CB]
PF00467KOW motif (KOW)KOW motif- Family
IB [auth CC]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
IB [auth CC]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
IB [auth CC]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
JB [auth CD]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
JB [auth CD]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
JB [auth CD]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
KB [auth CE],
LB [auth CF]
PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
KB [auth CE],
LB [auth CF]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
F [auth UL]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
F [auth UL]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MB [auth CG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MB [auth CG]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
NB [auth CT]PF08698Fcf2 pre-rRNA processing (Fcf2)Fcf2 pre-rRNA processing- Family
G [auth UM]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
G [auth UM]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth UA]Periodic tryptophan protein 2-like protein-
J [auth UU]Putative U3 snoRNP protein-
K [auth UX]Utp24---
L [auth CJ]Imp3
M [auth CK]Putative U3 small nucleolar ribonucleoprotein
N [auth CL]Putative U3 small nucleolar ribonucleoprotein protein-
O [auth CM]Sof1-
P [auth CN],
Q [auth CO]
Emg1
R [auth CP]KRR1 small subunit processome component
S [auth CQ]Pre-rRNA-processing protein PNO1
T [auth Ca]40S ribosomal protein S1
B [auth UC]Utp3-
U [auth Cc]40S ribosomal protein s5-like protein
V [auth Ce]40S ribosomal protein S7
W [auth Cg]40S ribosomal protein s9-like protein
X [auth Ch]40S ribosomal protein S13-like protein
Y [auth Ci]40S ribosomal protein S14-like protein
Z [auth Cj]40S ribosomal protein S16-like protein
AA [auth Cm]40S ribosomal protein S22-like protein
BA [auth Cn]40S ribosomal protein s23-like protein
CA [auth Cp]40S ribosomal protein S28-like protein
DA [auth Cq]Ribosomal protein s27-like protein
C [auth UF]Utp6
EA [auth CU]Faf1-
FA [auth C1]35S ribosomal RNA---
GA [auth UV]U3 small nucleolar RNA-associated protein 22
HA [auth CV]Rrp7-
IA [auth Cl]Putative ribosomal protein
JA [auth CH]RNA 3'-terminal phosphate cyclase-like protein
KA [auth CI]Bms1
LA [auth CR],
MA [auth CS]
Kre33
NA [auth Cb]40S ribosomal protein S4
OA [auth Cd]40S ribosomal protein S6
D [auth UG]Utp7-
PA [auth Cf]40S ribosomal protein S8
QA [auth Ck]40S ribosomal protein S11-like protein
RA [auth Co]40S ribosomal protein S24
SA [auth CW]Ribosome biogenesis protein ENP2-
TA [auth UT]Utp20- -
UA [auth CZ]Bfr2-
VA [auth UB]Utp2-
WA [auth UD]Utp4
XA [auth UJ]UTP10
YA [auth UO]Utp15-
E [auth UK]U3 small nucleolar RNA-associated protein 11-
ZA [auth UQ]Utp17
AB [auth CX]Enp1
BB [auth UI],
EB [auth UE]
Utp5-
CB [auth UP]Utp16 -
DB [auth UH]Utp8- -
FB [auth US]Noc4-
GB [auth CA],
HB [auth CB]
Nop1
IB [auth CC]Putative nucleolar protein
JB [auth CD]Nop58
KB [auth CE],
LB [auth CF]
Snu13
F [auth UL]Utp12
MB [auth CG]Rrp9 -
NB [auth CT]Fcf2
OB [auth C2]U3 snoRNA---
PB [auth Cr]40S ribosomal protein S19-like protein
G [auth UM]Utp13
H [auth UN]Utp14-
I [auth UR]Utp18-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth UA]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
A [auth UA]IPR001680WD40 repeatRepeat
A [auth UA]IPR019775WD40 repeat, conserved siteConserved Site
A [auth UA]IPR011044Quinoprotein amine dehydrogenase, beta chain-likeHomologous Superfamily
A [auth UA]IPR007148Small-subunit processome, Utp12Domain
A [auth UA]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A [auth UA]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth UA]IPR027145Periodic tryptophan protein 2Family
J [auth UU]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
J [auth UU]IPR007319Small-subunit processome, Utp21Domain
J [auth UU]IPR001680WD40 repeatRepeat
J [auth UU]IPR019775WD40 repeat, conserved siteConserved Site
J [auth UU]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
L [auth CJ]IPR002942RNA-binding S4 domainDomain
L [auth CJ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
L [auth CJ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
L [auth CJ]IPR022801Small ribosomal subunit protein uS4Family
M [auth CK]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
M [auth CK]IPR007109Brix domainDomain
N [auth CL]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
O [auth CM]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
O [auth CM]IPR001680WD40 repeatRepeat
O [auth CM]IPR019775WD40 repeat, conserved siteConserved Site
O [auth CM]IPR051733WD repeat-containing DCAF13/WDSOF1Family
O [auth CM]IPR007287Sof1-like proteinDomain
O [auth CM]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
O [auth CM]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
P [auth CN],
Q [auth CO]
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
P [auth CN],
Q [auth CO]
IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
P [auth CN],
Q [auth CO]
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
R [auth CP]IPR004087K Homology domainDomain
R [auth CP]IPR048550KRR1 small subunit processome component, first KH domain, eukaryotesDomain
R [auth CP]IPR041174KRR1 small subunit processome component, first KH domainDomain
R [auth CP]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
R [auth CP]IPR048548KRR1 small subunit processome component, second KH domainDomain
R [auth CP]IPR024166Ribosomal RNA assembly KRR1Family
R [auth CP]IPR048549KRR1 small subunit processome component, second KH domain, eukaryotesDomain
S [auth CQ]IPR004087K Homology domainDomain
S [auth CQ]IPR055211PNO1, second type I KH domainDomain
S [auth CQ]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
S [auth CQ]IPR055212PNO1, first type I KH domainDomain
T [auth Ca]IPR001593Small ribosomal subunit protein eS1Family
T [auth Ca]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
T [auth Ca]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
B [auth UC]IPR018972Sas10 C-terminal domainDomain
B [auth UC]IPR007146Sas10/Utp3/C1DFamily
U [auth Cc]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
U [auth Cc]IPR000235Small ribosomal subunit protein uS7Family
U [auth Cc]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
U [auth Cc]IPR023798Small ribosomal subunit protein uS7 domainDomain
U [auth Cc]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
V [auth Ce]IPR000554Small ribosomal subunit protein eS7Family
V [auth Ce]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
W [auth Cg]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
W [auth Cg]IPR002942RNA-binding S4 domainDomain
W [auth Cg]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
W [auth Cg]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
W [auth Cg]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
W [auth Cg]IPR022801Small ribosomal subunit protein uS4Family
X [auth Ch]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
X [auth Ch]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
X [auth Ch]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
X [auth Ch]IPR000589Small ribosomal subunit protein uS15Family
Y [auth Ci]IPR001971Small ribosomal subunit protein uS11Family
Y [auth Ci]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
Y [auth Ci]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
Z [auth Cj]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Z [auth Cj]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Z [auth Cj]IPR000754Small ribosomal subunit protein uS9Family
Z [auth Cj]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
AA [auth Cm]IPR000630Small ribosomal subunit protein uS8Family
AA [auth Cm]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
AA [auth Cm]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
BA [auth Cn]IPR006032Small ribosomal subunit protein uS12Family
BA [auth Cn]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BA [auth Cn]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
CA [auth Cp]IPR028626Ribosomal protein eS28 conserved siteConserved Site
CA [auth Cp]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth Cp]IPR000289Small ribosomal subunit protein eS28Family
DA [auth Cq]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
DA [auth Cq]IPR000592Small ribosomal subunit protein eS27Family
DA [auth Cq]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
C [auth UF]IPR003107HAT (Half-A-TPR) repeatRepeat
C [auth UF]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
C [auth UF]IPR013949U3 small nucleolar RNA-associated protein 6Family
C [auth UF]IPR055347U3 small nucleolar RNA-associated protein 6, N-terminalDomain
C [auth UF]IPR055433Pre-mRNA-splicing factor Syf1-like, N-terminal HAT-repeats domainDomain
EA [auth CU]IPR053030Ribosomal biogenesis protein FAF1-likeFamily
GA [auth UV]IPR035367Nrap protein, domain 2Domain
GA [auth UV]IPR035368Nrap protein, domain 3Domain
GA [auth UV]IPR035370Nrap protein, domain 5Domain
GA [auth UV]IPR005554NOL6/Upt22Family
GA [auth UV]IPR035369Nrap protein, domain 4Domain
GA [auth UV]IPR035082Nrap protein domain 1Domain
GA [auth UV]IPR035371Nrap protein, domain 6Domain
HA [auth CV]IPR040447Rrp7, RRM-like N-terminal domainDomain
HA [auth CV]IPR024326Ribosomal RNA-processing protein 7, C-terminal domainDomain
HA [auth CV]IPR040446Ribosomal RNA-processing protein 7Family
IA [auth Cl]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
IA [auth Cl]IPR001892Small ribosomal subunit protein uS13Family
IA [auth Cl]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
IA [auth Cl]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
JA [auth CH]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
JA [auth CH]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
JA [auth CH]IPR000228RNA 3'-terminal phosphate cyclaseFamily
JA [auth CH]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
JA [auth CH]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
JA [auth CH]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
JA [auth CH]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
KA [auth CI]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
KA [auth CI]IPR030387Bms1/Tsr1-type G domainDomain
KA [auth CI]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
KA [auth CI]IPR012948AARP2CNDomain
KA [auth CI]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
KA [auth CI]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
LA [auth CR],
MA [auth CS]
IPR007807TcmA/NAT10, helicase domainDomain
LA [auth CR],
MA [auth CS]
IPR027992Possible tRNA binding domainDomain
LA [auth CR],
MA [auth CS]
IPR013562TmcA/NAT10, N-terminalDomain
LA [auth CR],
MA [auth CS]
IPR032672TmcA/NAT10/Kre33Family
LA [auth CR],
MA [auth CS]
IPR033688RNA cytidine acetyltransferase NAT10Family
LA [auth CR],
MA [auth CS]
IPR000182GNAT domainDomain
LA [auth CR],
MA [auth CS]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
NA [auth Cb]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
NA [auth Cb]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
NA [auth Cb]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
NA [auth Cb]IPR002942RNA-binding S4 domainDomain
NA [auth Cb]IPR013845Small ribosomal subunit protein eS4, central regionDomain
NA [auth Cb]IPR000876Small ribosomal subunit protein eS4Family
NA [auth Cb]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
NA [auth Cb]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
NA [auth Cb]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
NA [auth Cb]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
NA [auth Cb]IPR005824KOWDomain
OA [auth Cd]IPR014401Small ribosomal subunit protein eS6-likeFamily
OA [auth Cd]IPR001377Small ribosomal subunit protein eS6Family
OA [auth Cd]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
D [auth UG]IPR012952BING4, C-terminal domainDomain
D [auth UG]IPR001680WD40 repeatRepeat
D [auth UG]IPR019775WD40 repeat, conserved siteConserved Site
D [auth UG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D [auth UG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D [auth UG]IPR040315WD repeat-containing protein WDR46/Utp7Family
PA [auth Cf]IPR001047Small ribosomal subunit protein eS8Family
PA [auth Cf]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
PA [auth Cf]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
QA [auth Ck]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
QA [auth Ck]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
QA [auth Ck]IPR000266Small ribosomal subunit protein uS17Family
QA [auth Ck]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
QA [auth Ck]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
RA [auth Co]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
RA [auth Co]IPR001976Small ribosomal subunit protein eS24Family
RA [auth Co]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
RA [auth Co]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
SA [auth CW]IPR056550Nucleolar protein 10-like, second domainDomain
SA [auth CW]IPR040382Nucleolar protein 10/Enp2Family
SA [auth CW]IPR012580NUC153Domain
SA [auth CW]IPR056551Nucleolar protein 10-like, N-terminal domainDomain
SA [auth CW]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
SA [auth CW]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
TA [auth UT]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
TA [auth UT]IPR046523U3 small nucleolar RNA-associated protein 20 domainDomain
TA [auth UT]IPR011989Armadillo-like helicalHomologous Superfamily
TA [auth UT]IPR016024Armadillo-type foldHomologous Superfamily
TA [auth UT]IPR052575Small subunit processome component 20Family
UA [auth CZ]IPR012617Apoptosis-antagonizing transcription factor, C-terminalDomain
UA [auth CZ]IPR025160AATF leucine zipper-containing domainDomain
UA [auth CZ]IPR039223Protein AATF/Bfr2Family
VA [auth UB]IPR007276Nucleolar protein 14Family
WA [auth UD]IPR018391Pyrrolo-quinoline quinone beta-propeller repeatRepeat
WA [auth UD]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
WA [auth UD]IPR046351U3 small nucleolar RNA-associated protein 4Family
WA [auth UD]IPR001680WD40 repeatRepeat
WA [auth UD]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
XA [auth UJ]IPR056473Utp10/HEAT1, HEAT-repeats domainDomain
XA [auth UJ]IPR011989Armadillo-like helicalHomologous Superfamily
XA [auth UJ]IPR016024Armadillo-type foldHomologous Superfamily
XA [auth UJ]IPR040191U3 small nucleolar RNA-associated protein 10Family
XA [auth UJ]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
XA [auth UJ]IPR012954BP28, C-terminal domainDomain
YA [auth UO]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
YA [auth UO]IPR001680WD40 repeatRepeat
YA [auth UO]IPR019775WD40 repeat, conserved siteConserved Site
YA [auth UO]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
YA [auth UO]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
YA [auth UO]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth UK]IPR007144Small-subunit processome, Utp11Family
ZA [auth UQ]IPR001680WD40 repeatRepeat
ZA [auth UQ]IPR053826WD repeat-containing protein 75Family
ZA [auth UQ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
ZA [auth UQ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AB [auth CX]IPR007955BystinFamily
BB [auth UI],
EB [auth UE]
IPR052414U3 small nucleolar RNA-associated WD repeat-containing proteinFamily
BB [auth UI],
EB [auth UE]
IPR007148Small-subunit processome, Utp12Domain
CB [auth UP]IPR013268U3 small nucleolar RNA-associated protein 16Family
FB [auth US]IPR027193Nucleolar complex protein 4Family
FB [auth US]IPR016024Armadillo-type foldHomologous Superfamily
FB [auth US]IPR005612CCAAT-binding factorDomain
GB [auth CA],
HB [auth CB]
IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
GB [auth CA],
HB [auth CB]
IPR020813Fibrillarin, conserved siteConserved Site
GB [auth CA],
HB [auth CB]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
IB [auth CC]IPR042239Nop, C-terminal domainHomologous Superfamily
IB [auth CC]IPR036070Nop domain superfamilyHomologous Superfamily
IB [auth CC]IPR045056Nucleolar protein Nop56/Nop58Family
IB [auth CC]IPR012974Nucleolar protein 58/56, N-terminalDomain
IB [auth CC]IPR002687Nop domainDomain
IB [auth CC]IPR012976NOSICDomain
JB [auth CD]IPR042239Nop, C-terminal domainHomologous Superfamily
JB [auth CD]IPR036070Nop domain superfamilyHomologous Superfamily
JB [auth CD]IPR045056Nucleolar protein Nop56/Nop58Family
JB [auth CD]IPR012974Nucleolar protein 58/56, N-terminalDomain
JB [auth CD]IPR002687Nop domainDomain
JB [auth CD]IPR012976NOSICDomain
KB [auth CE],
LB [auth CF]
IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
KB [auth CE],
LB [auth CF]
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
KB [auth CE],
LB [auth CF]
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
KB [auth CE],
LB [auth CF]
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
KB [auth CE],
LB [auth CF]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
KB [auth CE],
LB [auth CF]
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
F [auth UL]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
F [auth UL]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
F [auth UL]IPR001680WD40 repeatRepeat
F [auth UL]IPR019775WD40 repeat, conserved siteConserved Site
F [auth UL]IPR007148Small-subunit processome, Utp12Domain
F [auth UL]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
F [auth UL]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F [auth UL]IPR051570TBC1 domain family involved in cilium biogenesisFamily
MB [auth CG]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
MB [auth CG]IPR001680WD40 repeatRepeat
MB [auth CG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
MB [auth CG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
NB [auth CT]IPR039883Fcf2/DNTTIP2Family
NB [auth CT]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
PB [auth Cr]IPR001266Small ribosomal subunit protein eS19Family
PB [auth Cr]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
PB [auth Cr]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
G [auth UM]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
G [auth UM]IPR001680WD40 repeatRepeat
G [auth UM]IPR019775WD40 repeat, conserved siteConserved Site
G [auth UM]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
G [auth UM]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
G [auth UM]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
H [auth UN]IPR006709Small-subunit processome, Utp14Family
I [auth UR]IPR001680WD40 repeatRepeat
I [auth UR]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
I [auth UR]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
I [auth UR]IPR045161U3 small nucleolar RNA-associated protein 18Family