6T2B | pdb_00006t2b

Glycoside hydrolase family 109 from Akkermansia muciniphila in complex with GalNAc and NAD+.

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01408	Oxidoreductase family, NAD-binding Rossmann fold (GFO_IDH_MocA)	Oxidoreductase family, NAD-binding Rossmann fold	This entry represents the N-terminal domain of a group of enzymes that utilise NADP or NAD, known as the GFO/IDH/MOCA family, which includes enzymes that catalyse different chemical reactions such as oxidation and reduction of carbohydrates, oxidatio ...	This entry represents the N-terminal domain of a group of enzymes that utilise NADP or NAD, known as the GFO/IDH/MOCA family, which includes enzymes that catalyse different chemical reactions such as oxidation and reduction of carbohydrates, oxidation of trans-dihydrodiols, reduction of biliverdin and hydrolysation of glycosidic bonds. This domain adopts a a typical Rossmann fold.	Domain
A, B, C, D	PF21252	Glycosyl hydrolase 109, C-terminal domain (Glyco_hydro_109_C)	Glycosyl hydrolase 109, C-terminal domain	This domain is found at the C-terminal end of the group of bacterial glycosyl hydrolases 109, including Alpha-N-acetylgalactosaminidase from Elizabethkingia meningoseptica. This domain shows a large open-faced, seven-stranded, anti-parallel beta-shee ...	This domain is found at the C-terminal end of the group of bacterial glycosyl hydrolases 109, including Alpha-N-acetylgalactosaminidase from Elizabethkingia meningoseptica. This domain shows a large open-faced, seven-stranded, anti-parallel beta-sheet, adjacent to nine alpha-helices and an alpha-helical bundle covering the dinucleotide-binding tunnel [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Glycosyl hydrolase family 109 protein 2	hydrolase activity, acting on glycosyl bonds hydrolase activity catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR049303	Glycosyl hydrolase 109, C-terminal domain	Domain
A, B, C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR050463	Gfo/Idh/MocA family oxidoreductases and glycosidases	Family
A, B, C, D	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
A, B, C, D	IPR019546	Twin-arginine translocation pathway, signal sequence, bacterial/archaeal	Conserved Site
A, B, C, D	IPR000683	Gfo/Idh/MocA-like oxidoreductase, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.