6V3B | pdb_00006v3b

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth H]SCOP2 FamilyRibosomal protein L9 N-domain 8094702 4001757 SCOP2 (2022-06-29)
L [auth H]SCOP2 SuperfamilyL9 N-domain-like 8094703 3000338 SCOP2 (2022-06-29)
M [auth I]SCOP2B SuperfamilyRibosomal protein L13 8094699 3001134 SCOP2B (2022-06-29)
O [auth K]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8094807 3001045 SCOP2B (2022-06-29)
Q [auth M]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8094635 3000995 SCOP2B (2022-06-29)
U [auth Q]SCOP2B Superfamilyl21p-like 8094927 3002005 SCOP2B (2022-06-29)
X [auth T]SCOP2 FamilyRibosomal proteins L24p and L21e 8095142 4001752 SCOP2 (2022-06-29)
X [auth T]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8095143 3000334 SCOP2 (2022-06-29)
Z [auth V]SCOP2B SuperfamilyRibosomal L27 protein-like 8094697 3000539 SCOP2B (2022-06-29)
AA [auth W]SCOP2B SuperfamilyL28p-like 8094655 3001966 SCOP2B (2022-06-29)
DA [auth Z]SCOP2B SuperfamilyZn-binding ribosomal proteins 8094090 3001320 SCOP2B (2022-06-29)
JA [auth f]SCOP2B SuperfamilyRibosomal protein S6 8097302 3001323 SCOP2B (2022-06-29)
KA [auth g]SCOP2B SuperfamilyRibosomal protein S7 8095221 3000799 SCOP2B (2022-06-29)
LA [auth h]SCOP2B SuperfamilyRibosomal protein S8 8095511 3000709 SCOP2B (2022-06-29)
MA [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8095449 3000100 SCOP2B (2022-06-29)
RA [auth n]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8094092 3000068 SCOP2B (2022-06-29)
TA [auth p]SCOP2B SuperfamilyRibosomal protein S16 8095491 3000680 SCOP2B (2022-06-29)
UA [auth q]SCOP2 FamilyCold shock DNA-binding domain-like 8095098 4001909 SCOP2 (2022-06-29)
UA [auth q]SCOP2 SuperfamilyNucleic acid-binding proteins 8095099 3000135 SCOP2 (2022-06-29)
I [auth E]SCOP2B SuperfamilyRibosomal protein L4 8094701 3001146 SCOP2B (2022-06-29)
H [auth D]SCOP2 FamilyRibosomal protein L3 8094764 4002103 SCOP2 (2022-06-29)
H [auth D]SCOP2 SuperfamilyTranslational proteins 8094765 3000811 SCOP2 (2022-06-29)
WA [auth s]SCOP2B SuperfamilyRibosomal protein S19 8094763 3000686 SCOP2B (2022-06-29)
SA [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8094032 3001284 SCOP2B (2022-06-29)
QA [auth m]SCOP2 FamilyRibosomal protein S13 8094107 4000260 SCOP2 (2022-06-29)
QA [auth m]SCOP2 SuperfamilyS13-like H2TH domain 8094108 3000053 SCOP2 (2022-06-29)
PA [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins 8094567 3000135 SCOP2B (2022-06-29)
HA [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8097300 3001473 SCOP2B (2022-06-29)
FA [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8094677 3001397 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyL35p-like 8095141 3000790 SCOP2B (2022-06-29)
CA [auth Y]SCOP2 FamilyRibosomal protein L30p/L7e 8094766 4001360 SCOP2 (2022-06-29)
CA [auth Y]SCOP2 SuperfamilyRibosomal protein L30p/L7e 8094767 3001378 SCOP2 (2022-06-29)
BA [auth X]SCOP2 FamilyRibosomal protein L29 (L29p) 8095222 4000600 SCOP2 (2022-06-29)
BA [auth X]SCOP2 SuperfamilyRibosomal protein L29 (L29p) 8095223 3000713 SCOP2 (2022-06-29)
Y [auth U]SCOP2B SuperfamilyRibosomal protein L25-like 8095559 3001161 SCOP2B (2022-06-29)
W [auth S]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095101 3000210 SCOP2B (2022-06-29)
T [auth P]SCOP2B SuperfamilyRibosomal protein L20 8094513 3000563 SCOP2B (2022-06-29)
S [auth O]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8094729 3000334 SCOP2B (2022-06-29)
R [auth N]SCOP2B SuperfamilyTranslational machinery components 8095061 3000571 SCOP2B (2022-06-29)
P [auth L]SCOP2 FamilyRibosomal protein L16p 8094628 4003717 SCOP2 (2022-06-29)
P [auth L]SCOP2 SuperfamilyRibosomal protein L16p/L10e 8094629 3000884 SCOP2 (2022-06-29)
J [auth F]SCOP2B SuperfamilyRL5-like 8094034 3001709 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 0]Ribosomal_L33e6v3b01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
B [auth 1]Ribosomal_L34e6v3b11 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
D [auth 3]Ribosomal_L36e6v3b31 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
G [auth C]Ribosomal_L2_1e6v3bC1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
G [auth C]Ribosomal_L2_Ce6v3bC2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
K [auth G]Ribosomal_L6e6v3bG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
K [auth G]Ribosomal_L6_1e6v3bG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
L [auth H]Ribosomal_L9_Ne6v3bH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
M [auth I]Ribosomal_L13e6v3bI1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
O [auth K]Ribosomal_L27Ae6v3bK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
Q [auth M]Ribosomal_L17_1e6v3bM1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
U [auth Q]Ribosomal_L21pe6v3bQ1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
V [auth R]Ribosomal_L22e6v3bR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
X [auth T]ribosomal_L24_1e6v3bT1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
Z [auth V]Ribosomal_L27e6v3bV1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
AA [auth W]Ribosomal_L28e6v3bW1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
DA [auth Z]Ribosomal_L32pe6v3bZ1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
IA [auth e]Ribosomal_S5_Ce6v3be2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
IA [auth e]Ribosomal_S5e6v3be1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
JA [auth f]Ribosomal_S6e6v3bf1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
KA [auth g]Ribosomal_S7e6v3bg1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7ECOD (1.6)
LA [auth h]Ribosomal_S8_Ne6v3bh1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
LA [auth h]Ribosomal_S8_Ce6v3bh2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
MA [auth i]Ribosomal_S9e6v3bi1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
RA [auth n]Ribosomal_S14_1e6v3bn1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
TA [auth p]Ribosomal_S16_1e6v3bp1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16_1ECOD (1.6)
UA [auth q]Ribosomal_S17_1e6v3bq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
VA [auth r]Ribosomal_S18e6v3br1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
XA [auth t]Ribosomal_S20pe6v3bt1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
I [auth E]Ribosomal_L4e6v3bE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
H [auth D]Ribosomal_L3e6v3bD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
WA [auth s]Ribosomal_S19e6v3bs1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
SA [auth o]Ribosomal_S15_1e6v3bo1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
QA [auth m]Ribosomal_S13_1e6v3bm1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
PA [auth l]Ribosom_S12_S23e6v3bl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
OA [auth k]Ribosomal_S11e6v3bk1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
NA [auth j]Ribosomal_S10e6v3bj1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
HA [auth d]S4e6v3bd1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
GA [auth c]Ribosomal_S3_Ce6v3bc1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
GA [auth c]KH_2_1e6v3bc2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
FA [auth b]Ribosomal_S2e6v3bb1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
C [auth 2]Ribosomal_L35pe6v3b21 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
CA [auth Y]Ribosomal_L30e6v3bY1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
BA [auth X]Ribosomal_L29e6v3bX1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
Y [auth U]Ribosomal_L25pe6v3bU1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
W [auth S]Ribosomal_L23_2e6v3bS1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
T [auth P]Ribosomal_L20e6v3bP1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
S [auth O]Ribosomal_L19e6v3bO1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
R [auth N]Ribosomal_L18pe6v3bN1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
P [auth L]Ribosomal_L16e6v3bL1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
N [auth J]Ribosomal_L14e6v3bJ1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
J [auth F]Ribosomal_L5_Ce6v3bF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth 1]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
G [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
G [auth C]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
G [auth C]PF07650KH domain (KH_2)KH domainDomain
G [auth C]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
K [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
L [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
L [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
M [auth I]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
M [auth I]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
O [auth K]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
Q [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
Q [auth M]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
U [auth Q]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
U [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
X [auth T]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
X [auth T]PF00467KOW motif (KOW)KOW motif- Family
AA [auth W]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
DA [auth Z]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
I [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
I [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
H [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
H [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
H [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
F [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
C [auth 2]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
BA [auth X]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
Y [auth U]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
W [auth S]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
W [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
T [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
T [auth P]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
S [auth O]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
S [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
R [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
P [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
P [auth L]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
N [auth J]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
J [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
J [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
J [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]50S ribosomal protein L33---
B [auth 1]50S ribosomal protein L34
D [auth 3]50S ribosomal protein L36---
E [auth AN1]23s ribosomal RNA---
G [auth C]50S ribosomal protein L2
K [auth G]50S ribosomal protein L6
L [auth H]50S ribosomal protein L9
M [auth I]50S ribosomal protein L13
O [auth K]50S ribosomal protein L15
Q [auth M]50S ribosomal protein L17
U [auth Q]50S ribosomal protein L21
V [auth R]50S ribosomal protein L22---
X [auth T]50S ribosomal protein L24
Z [auth V]50S ribosomal protein L27
AA [auth W]50S ribosomal protein L28
DA [auth Z]50S ribosomal protein L32
IA [auth e]30S ribosomal protein S5
JA [auth f]30S ribosomal protein S6
KA [auth g]30S ribosomal protein S7
LA [auth h]30S ribosomal protein S8
MA [auth i]30S ribosomal protein S9
RA [auth n]30S ribosomal protein S14
TA [auth p]30S ribosomal protein S16
UA [auth q]30S ribosomal protein S17
VA [auth r]30S ribosomal protein S18
XA [auth t]30S ribosomal protein S20
I [auth E]50S ribosomal protein L4
H [auth D]50S ribosomal protein L3
F [auth B]5s ribosomal RNA---
YA [auth u]30S ribosomal protein S21---
WA [auth s]30S ribosomal protein S19
SA [auth o]30S ribosomal protein S15
QA [auth m]30S ribosomal protein S13
PA [auth l]30S ribosomal protein S12
OA [auth k]30S ribosomal protein S11---
NA [auth j]30S ribosomal protein S10---
HA [auth d]30S ribosomal protein S4
GA [auth c]30S ribosomal protein S3
FA [auth b]30S ribosomal protein S2
EA [auth sN1]16s Ribosomal RNA---
C [auth 2]50S ribosomal protein L35
CA [auth Y]50S ribosomal protein L30---
BA [auth X]50S ribosomal protein L29
Y [auth U]50S ribosomal protein L25
W [auth S]50S ribosomal protein L23
T [auth P]50S ribosomal protein L20
S [auth O]50S ribosomal protein L19
R [auth N]50S ribosomal protein L18
P [auth L]50S ribosomal protein L16
N [auth J]50S ribosomal protein L14
J [auth F]50S ribosomal protein L5

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth 1]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
B [auth 1]IPR000271Large ribosomal subunit protein bL34Family
G [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
G [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
G [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
G [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
G [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
G [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
G [auth C]IPR002171Large ribosomal subunit protein uL2Family
K [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
K [auth G]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
K [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
L [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
L [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
L [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
L [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
L [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
L [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
L [auth H]IPR000244Large ribosomal subunit protein bL9Family
M [auth I]IPR005822Large ribosomal subunit protein uL13Family
M [auth I]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
M [auth I]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
O [auth K]IPR021131Large ribosomal subunit protein uL15/eL18Domain
O [auth K]IPR030878Large ribosomal subunit protein uL15Family
O [auth K]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
O [auth K]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
O [auth K]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
Q [auth M]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
Q [auth M]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
Q [auth M]IPR000456Large ribosomal subunit protein bL17Family
U [auth Q]IPR028909Large ribosomal subunit protein bL21-likeFamily
U [auth Q]IPR001787Large ribosomal subunit protein bL21Family
U [auth Q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
U [auth Q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
X [auth T]IPR003256Large ribosomal subunit protein uL24Family
X [auth T]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
X [auth T]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth T]IPR005824KOWDomain
X [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth T]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
Z [auth V]IPR001684Large ribosomal subunit protein bL27Family
Z [auth V]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
AA [auth W]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
AA [auth W]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
AA [auth W]IPR026569Large ribosomal subunit protein bL28Family
AA [auth W]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
DA [auth Z]IPR002677Large ribosomal subunit protein bL32Family
DA [auth Z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth Z]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
IA [auth e]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
IA [auth e]IPR000851Small ribosomal subunit protein uS5Family
IA [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IA [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IA [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IA [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IA [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
JA [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
JA [auth f]IPR000529Small ribosomal subunit protein bS6Family
JA [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
JA [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
JA [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
KA [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
KA [auth g]IPR000235Small ribosomal subunit protein uS7Family
KA [auth g]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
KA [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
KA [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
LA [auth h]IPR000630Small ribosomal subunit protein uS8Family
LA [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
LA [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
MA [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
MA [auth i]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
MA [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
MA [auth i]IPR000754Small ribosomal subunit protein uS9Family
MA [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
RA [auth n]IPR001209Small ribosomal subunit protein uS14Family
RA [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
RA [auth n]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
TA [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
TA [auth p]IPR000307Small ribosomal subunit protein bS16Family
TA [auth p]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
UA [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
UA [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
UA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
UA [auth q]IPR000266Small ribosomal subunit protein uS17Family
VA [auth r]IPR001648Small ribosomal subunit protein bS18Family
VA [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
VA [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
XA [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
XA [auth t]IPR002583Small ribosomal subunit protein bS20Family
I [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
I [auth E]IPR002136Large ribosomal subunit protein uL4Family
I [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
H [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
H [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
H [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
H [auth D]IPR000597Large ribosomal subunit protein uL3Family
WA [auth s]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
WA [auth s]IPR002222Small ribosomal subunit protein uS19Family
WA [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
WA [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
SA [auth o]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
SA [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
SA [auth o]IPR000589Small ribosomal subunit protein uS15Family
QA [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
QA [auth m]IPR001892Small ribosomal subunit protein uS13Family
QA [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
QA [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
QA [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
PA [auth l]IPR006032Small ribosomal subunit protein uS12Family
PA [auth l]IPR005679Ribosomal protein uS12, bacteriaFamily
PA [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HA [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
HA [auth d]IPR002942RNA-binding S4 domainDomain
HA [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
HA [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
HA [auth d]IPR022801Small ribosomal subunit protein uS4Family
HA [auth d]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
GA [auth c]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
GA [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
GA [auth c]IPR057258Small ribosomal subunit protein uS3Family
GA [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
GA [auth c]IPR004087K Homology domainDomain
GA [auth c]IPR004044K Homology domain, type 2Domain
GA [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
GA [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
GA [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
FA [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
FA [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
FA [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
FA [auth b]IPR001865Small ribosomal subunit protein uS2Family
C [auth 2]IPR021137Large ribosomal subunit protein bL35-likeFamily
C [auth 2]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
C [auth 2]IPR001706Large ribosomal subunit protein bL35Family
C [auth 2]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
BA [auth X]IPR050063Universal ribosomal protein uL29Family
BA [auth X]IPR001854Large ribosomal subunit protein uL29Family
BA [auth X]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
Y [auth U]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
Y [auth U]IPR020055Ribosomal protein bL25, short-formFamily
Y [auth U]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
Y [auth U]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
Y [auth U]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
W [auth S]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth S]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
W [auth S]IPR013025Large ribosomal subunit protein uL23-likeFamily
T [auth P]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
T [auth P]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
T [auth P]IPR005813Large ribosomal subunit protein bL20Family
S [auth O]IPR001857Large ribosomal subunit protein bL19Family
S [auth O]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
S [auth O]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
S [auth O]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth N]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
R [auth N]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
P [auth L]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
P [auth L]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
P [auth L]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
P [auth L]IPR016180Large ribosomal subunit protein uL16 domainDomain
P [auth L]IPR047873Large ribosomal subunit protein uL16Family
N [auth J]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
N [auth J]IPR000218Large ribosomal subunit protein uL14Family
N [auth J]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
N [auth J]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
J [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
J [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
J [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
J [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
J [auth F]IPR002132Large ribosomal subunit protein uL5Family
J [auth F]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily