Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| L [auth H] | SCOP2 Family | Ribosomal protein L9 N-domain | 8094702 | 4001757 | SCOP2 (2022-06-29) |
| L [auth H] | SCOP2 Superfamily | L9 N-domain-like | 8094703 | 3000338 | SCOP2 (2022-06-29) |
| M [auth I] | SCOP2B Superfamily | Ribosomal protein L13 | 8094699 | 3001134 | SCOP2B (2022-06-29) |
| O [auth K] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8094807 | 3001045 | SCOP2B (2022-06-29) |
| Q [auth M] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8094635 | 3000995 | SCOP2B (2022-06-29) |
| U [auth Q] | SCOP2B Superfamily | l21p-like | 8094927 | 3002005 | SCOP2B (2022-06-29) |
| X [auth T] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8095142 | 4001752 | SCOP2 (2022-06-29) |
| X [auth T] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8095143 | 3000334 | SCOP2 (2022-06-29) |
| Z [auth V] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8094697 | 3000539 | SCOP2B (2022-06-29) |
| AA [auth W] | SCOP2B Superfamily | L28p-like | 8094655 | 3001966 | SCOP2B (2022-06-29) |
| DA [auth Z] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8094090 | 3001320 | SCOP2B (2022-06-29) |
| JA [auth f] | SCOP2B Superfamily | Ribosomal protein S6 | 8097302 | 3001323 | SCOP2B (2022-06-29) |
| KA [auth g] | SCOP2B Superfamily | Ribosomal protein S7 | 8095221 | 3000799 | SCOP2B (2022-06-29) |
| LA [auth h] | SCOP2B Superfamily | Ribosomal protein S8 | 8095511 | 3000709 | SCOP2B (2022-06-29) |
| MA [auth i] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8095449 | 3000100 | SCOP2B (2022-06-29) |
| RA [auth n] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8094092 | 3000068 | SCOP2B (2022-06-29) |
| TA [auth p] | SCOP2B Superfamily | Ribosomal protein S16 | 8095491 | 3000680 | SCOP2B (2022-06-29) |
| UA [auth q] | SCOP2 Family | Cold shock DNA-binding domain-like | 8095098 | 4001909 | SCOP2 (2022-06-29) |
| UA [auth q] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8095099 | 3000135 | SCOP2 (2022-06-29) |
| I [auth E] | SCOP2B Superfamily | Ribosomal protein L4 | 8094701 | 3001146 | SCOP2B (2022-06-29) |
| H [auth D] | SCOP2 Family | Ribosomal protein L3 | 8094764 | 4002103 | SCOP2 (2022-06-29) |
| H [auth D] | SCOP2 Superfamily | Translational proteins | 8094765 | 3000811 | SCOP2 (2022-06-29) |
| WA [auth s] | SCOP2B Superfamily | Ribosomal protein S19 | 8094763 | 3000686 | SCOP2B (2022-06-29) |
| SA [auth o] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8094032 | 3001284 | SCOP2B (2022-06-29) |
| QA [auth m] | SCOP2 Family | Ribosomal protein S13 | 8094107 | 4000260 | SCOP2 (2022-06-29) |
| QA [auth m] | SCOP2 Superfamily | S13-like H2TH domain | 8094108 | 3000053 | SCOP2 (2022-06-29) |
| PA [auth l] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8094567 | 3000135 | SCOP2B (2022-06-29) |
| HA [auth d] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8097300 | 3001473 | SCOP2B (2022-06-29) |
| FA [auth b] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8094677 | 3001397 | SCOP2B (2022-06-29) |
| C [auth 2] | SCOP2B Superfamily | L35p-like | 8095141 | 3000790 | SCOP2B (2022-06-29) |
| CA [auth Y] | SCOP2 Family | Ribosomal protein L30p/L7e | 8094766 | 4001360 | SCOP2 (2022-06-29) |
| CA [auth Y] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8094767 | 3001378 | SCOP2 (2022-06-29) |
| BA [auth X] | SCOP2 Family | Ribosomal protein L29 (L29p) | 8095222 | 4000600 | SCOP2 (2022-06-29) |
| BA [auth X] | SCOP2 Superfamily | Ribosomal protein L29 (L29p) | 8095223 | 3000713 | SCOP2 (2022-06-29) |
| Y [auth U] | SCOP2B Superfamily | Ribosomal protein L25-like | 8095559 | 3001161 | SCOP2B (2022-06-29) |
| W [auth S] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095101 | 3000210 | SCOP2B (2022-06-29) |
| T [auth P] | SCOP2B Superfamily | Ribosomal protein L20 | 8094513 | 3000563 | SCOP2B (2022-06-29) |
| S [auth O] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8094729 | 3000334 | SCOP2B (2022-06-29) |
| R [auth N] | SCOP2B Superfamily | Translational machinery components | 8095061 | 3000571 | SCOP2B (2022-06-29) |
| P [auth L] | SCOP2 Family | Ribosomal protein L16p | 8094628 | 4003717 | SCOP2 (2022-06-29) |
| P [auth L] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8094629 | 3000884 | SCOP2 (2022-06-29) |
| J [auth F] | SCOP2B Superfamily | RL5-like | 8094034 | 3001709 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth 0] | Ribosomal_L33 | e6v3b01 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
| B [auth 1] | Ribosomal_L34 | e6v3b11 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
| D [auth 3] | Ribosomal_L36 | e6v3b31 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
| G [auth C] | Ribosomal_L2_1 | e6v3bC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
| G [auth C] | Ribosomal_L2_C | e6v3bC2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C | ECOD (1.6) |
| K [auth G] | Ribosomal_L6 | e6v3bG2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
| K [auth G] | Ribosomal_L6_1 | e6v3bG1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_1 | ECOD (1.6) |
| L [auth H] | Ribosomal_L9_N | e6v3bH1 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: Ribosomal_L9_N | ECOD (1.6) |
| M [auth I] | Ribosomal_L13 | e6v3bI1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
| O [auth K] | Ribosomal_L27A | e6v3bK1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
| Q [auth M] | Ribosomal_L17_1 | e6v3bM1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
| U [auth Q] | Ribosomal_L21p | e6v3bQ1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
| V [auth R] | Ribosomal_L22 | e6v3bR1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
| X [auth T] | ribosomal_L24_1 | e6v3bT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24_1 | ECOD (1.6) |
| Z [auth V] | Ribosomal_L27 | e6v3bV1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
| AA [auth W] | Ribosomal_L28 | e6v3bW1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28 | ECOD (1.6) |
| DA [auth Z] | Ribosomal_L32p | e6v3bZ1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
| IA [auth e] | Ribosomal_S5_C | e6v3be2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C | ECOD (1.6) |
| IA [auth e] | Ribosomal_S5 | e6v3be1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5 | ECOD (1.6) |
| JA [auth f] | Ribosomal_S6 | e6v3bf1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6 | ECOD (1.6) |
| KA [auth g] | Ribosomal_S7 | e6v3bg1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7 | ECOD (1.6) |
| LA [auth h] | Ribosomal_S8_N | e6v3bh1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N | ECOD (1.6) |
| LA [auth h] | Ribosomal_S8_C | e6v3bh2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C | ECOD (1.6) |
| MA [auth i] | Ribosomal_S9 | e6v3bi1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
| RA [auth n] | Ribosomal_S14_1 | e6v3bn1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_1 | ECOD (1.6) |
| TA [auth p] | Ribosomal_S16_1 | e6v3bp1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: Ribosomal_S16_1 | ECOD (1.6) |
| UA [auth q] | Ribosomal_S17_1 | e6v3bq1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
| VA [auth r] | Ribosomal_S18 | e6v3br1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
| XA [auth t] | Ribosomal_S20p | e6v3bt1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: Ribosomal_S20p | ECOD (1.6) |
| I [auth E] | Ribosomal_L4 | e6v3bE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
| H [auth D] | Ribosomal_L3 | e6v3bD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
| WA [auth s] | Ribosomal_S19 | e6v3bs1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
| SA [auth o] | Ribosomal_S15_1 | e6v3bo1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_1 | ECOD (1.6) |
| QA [auth m] | Ribosomal_S13_1 | e6v3bm1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13_1 | ECOD (1.6) |
| PA [auth l] | Ribosom_S12_S23 | e6v3bl1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
| OA [auth k] | Ribosomal_S11 | e6v3bk1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
| NA [auth j] | Ribosomal_S10 | e6v3bj1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10 | ECOD (1.6) |
| HA [auth d] | S4 | e6v3bd1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
| GA [auth c] | Ribosomal_S3_C | e6v3bc1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
| GA [auth c] | KH_2_1 | e6v3bc2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_1 | ECOD (1.6) |
| FA [auth b] | Ribosomal_S2 | e6v3bb1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2 | ECOD (1.6) |
| C [auth 2] | Ribosomal_L35p | e6v3b21 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
| CA [auth Y] | Ribosomal_L30 | e6v3bY1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
| BA [auth X] | Ribosomal_L29 | e6v3bX1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
| Y [auth U] | Ribosomal_L25p | e6v3bU1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
| W [auth S] | Ribosomal_L23_2 | e6v3bS1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
| T [auth P] | Ribosomal_L20 | e6v3bP1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
| S [auth O] | Ribosomal_L19 | e6v3bO1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
| R [auth N] | Ribosomal_L18p | e6v3bN1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
| P [auth L] | Ribosomal_L16 | e6v3bL1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
| N [auth J] | Ribosomal_L14 | e6v3bJ1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
| J [auth F] | Ribosomal_L5_C | e6v3bF1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| B [auth 1] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| G [auth C] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| G [auth C] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| G [auth C] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| G [auth C] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| K [auth G] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| L [auth H] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| L [auth H] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| M [auth I] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| M [auth I] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| O [auth K] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| Q [auth M] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| Q [auth M] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| U [auth Q] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| U [auth Q] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| X [auth T] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| X [auth T] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| AA [auth W] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| DA [auth Z] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| I [auth E] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| I [auth E] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| H [auth D] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| H [auth D] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| H [auth D] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| F [auth B] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| C [auth 2] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| BA [auth X] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| Y [auth U] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| W [auth S] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| W [auth S] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| T [auth P] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| T [auth P] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| S [auth O] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| S [auth O] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| R [auth N] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| P [auth L] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| P [auth L] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| N [auth J] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| J [auth F] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| J [auth F] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| J [auth F] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |














