6XLA | pdb_00006xla

Cryo-EM structure of EcmrR-DNA complex in EcmrR-RPitc-3nt


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth G]MerR_1e6xlaG1 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: MerR_1ECOD (1.6)
A [auth G]GyrI-likee6xlaG2 A: a+b duplicates or obligate multimersX: Probable bacterial effector-binding domain (From Topology)H: Probable bacterial effector-binding domain (From Topology)T: Probable bacterial effector-binding domainF: GyrI-likeECOD (1.6)
B [auth H]MerR_1e6xlaH1 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: MerR_1ECOD (1.6)
B [auth H]GyrI-likee6xlaH2 A: a+b duplicates or obligate multimersX: Probable bacterial effector-binding domain (From Topology)H: Probable bacterial effector-binding domain (From Topology)T: Probable bacterial effector-binding domainF: GyrI-likeECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth G]3.20.80.10 Alpha Beta Alpha-Beta Barrel Multidrug-efflux Transporter 1 Regulator Bmrr Chain ACATH (utative)
B [auth H]3.20.80.10 Alpha Beta Alpha-Beta Barrel Multidrug-efflux Transporter 1 Regulator Bmrr Chain ACATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth G],
B [auth H]
PF06445GyrI-like small molecule binding domain (GyrI-like)GyrI-like small molecule binding domainThis family contains the small molecule binding domain of a number of different bacterial transcription activators [1]. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecu ...This family contains the small molecule binding domain of a number of different bacterial transcription activators [1]. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding [3]. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira [3].
Domain
A [auth G],
B [auth H]
PF13411MerR HTH family regulatory protein (MerR_1)MerR HTH family regulatory protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth G],
B [auth H]
MerR family transcriptional regulator EcmrR - -
C [auth N]synthetic non-template strand DNA (54-MER)---
D [auth T]synthetic template strand DNA (54-MER)---