6XN3
Structure of the Lactococcus lactis Csm CTR_4:3 CRISPR-Cas Complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth F] | SCOP2B Superfamily | CRISPR-associated proteins | 8106216 | 3001554 | SCOP2B (2022-06-29) |
D [auth H] | SCOP2B Superfamily | CRISPR-associated proteins | 8106216 | 3001554 | SCOP2B (2022-06-29) |
E [auth G] | SCOP2B Superfamily | CRISPR-associated proteins | 8106216 | 3001554 | SCOP2B (2022-06-29) |
F [auth I] | SCOP2B Superfamily | CRISPR-associated proteins | 8106216 | 3001554 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e6xn3A5 | A: alpha bundles | X: CRISPR RNA silencing complex Cmr2 subunit second helical domain (From Topology) | H: CRISPR RNA silencing complex Cmr2 subunit second helical domain (From Topology) | T: CRISPR RNA silencing complex Cmr2 subunit second helical domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | HD | e6xn3A4 | A: alpha complex topology | X: PDEase-like | H: HD-domain/PDEase-like (From Topology) | T: HD-domain/PDEase-like | F: HD | ECOD (1.6) |
A | Cas10_III_2nd | e6xn3A1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: Cas10_III_2nd | ECOD (1.6) |
A | Cas10_III_1st | e6xn3A3 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: Cas10_III_1st | ECOD (1.6) |
A | F_UNCLASSIFIED | e6xn3A2 | A: a+b two layers | X: Csm1 ferredoxin-like domain (From Topology) | H: Csm1 ferredoxin-like domain (From Topology) | T: Csm1 ferredoxin-like domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | RAMPs_1 | e6xn3B1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: RAMPs_1 | ECOD (1.6) |
B | Csm4 | e6xn3B2 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: Csm4 | ECOD (1.6) |
C [auth F] | RAMPs | e6xn3F1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: RAMPs | ECOD (1.6) |
D [auth H] | RAMPs | e6xn3H1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: RAMPs | ECOD (1.6) |
E [auth G] | RAMPs | e6xn3G1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: RAMPs | ECOD (1.6) |
F [auth I] | RAMPs | e6xn3I1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: RAMPs | ECOD (1.6) |
G [auth J] | RAMPs | e6xn3J1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: RAMPs | ECOD (1.6) |
I [auth C] | F_UNCLASSIFIED | e6xn3C1 | A: alpha duplicates or obligate multimers | X: Crispr-associated protein Csm2 (From Topology) | H: Crispr-associated protein Csm2 (From Topology) | T: Crispr-associated protein Csm2 | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth D] | F_UNCLASSIFIED | e6xn3D1 | A: alpha duplicates or obligate multimers | X: Crispr-associated protein Csm2 (From Topology) | H: Crispr-associated protein Csm2 (From Topology) | T: Crispr-associated protein Csm2 | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth E] | F_UNCLASSIFIED | e6xn3E1 | A: alpha duplicates or obligate multimers | X: Crispr-associated protein Csm2 (From Topology) | H: Crispr-associated protein Csm2 (From Topology) | T: Crispr-associated protein Csm2 | F: F_UNCLASSIFIED | ECOD (1.6) |
Gene Product Annotation Gene Product Annotation
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A | CRISPR-associated protein Cas10 | |||
B | CRISPR-associated protein Csm4 | |||
C [auth F], D [auth H], E [auth G], F [auth I] | CRISPR-associated protein Csm3 | |||
G [auth J] | CRISPR-associated protein Csm5 | |||
H [auth R] | Crispr RNA | none | none | none |
I [auth C], J [auth D], K [auth E] | CRISPR-associated protein Csm2 | |||
L [auth T] | target RNA | none | none | none |