6YF5 | pdb_00006yf5

Lamin A 17-70 coil1A dimer stabilized by C-terminal capping

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	EB1_1	e6yf5C1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: EB1_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
C	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
B	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
A	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03271	EB1-like C-terminal motif (EB1)	EB1-like C-terminal motif	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Prelamin-A/C,Microtubule-associated protein RP/EB family member 1	structural molecule activity structural constituent of nuclear lamina structural constituent of cytoskeleton identical protein binding protein binding binding RNA binding nucleic acid binding protein serine/threonine kinase binding kinase binding enzyme binding protein kinase binding cell adhesion molecule binding cadherin binding structural molecule activity structural constituent of nuclear lamina structural constituent of cytoskeleton identical protein binding protein binding binding RNA binding nucleic acid binding protein serine/threonine kinase binding kinase binding enzyme binding protein kinase binding cell adhesion molecule binding cadherin binding cytoskeletal protein binding microtubule plus-end binding microtubule binding tubulin binding	nuclear pore localization cellular localization localization within membrane protein-containing complex localization cellular component organization localization nucleus organization organelle organization macromolecule localization cellular process cellular component organization or biogenesis membrane organization nuclear envelope organization endomembrane system organization nuclear pore localization cellular localization localization within membrane protein-containing complex localization cellular component organization localization nucleus organization organelle organization macromolecule localization cellular process cellular component organization or biogenesis membrane organization nuclear envelope organization endomembrane system organization intracellular protein localization regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process response to decreased oxygen levels cellular response to stimulus response to stimulus cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels cellular response to chemical stimulus cellular response to stress response to hypoxia response to stress response to chemical response to oxygen levels response to abiotic stimulus establishment of organelle localization transport nucleus localization intracellular transport establishment of localization organelle localization establishment of localization in cell nuclear migration developmental process muscle structure development animal organ development anatomical structure development muscle organ development protein localization to organelle protein localization to nucleus protein localization to nuclear envelope establishment of protein localization nitrogen compound transport nucleocytoplasmic transport nuclear transport import into nucleus establishment of protein localization to organelle protein transport protein import into nucleus intracellular protein transport regulation of telomere maintenance regulation of cellular component organization telomere organization regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process chromosome organization primary metabolic process regulation of chromosome organization DNA metabolic process regulation of organelle organization nucleic acid metabolic process telomere maintenance regulation of DNA metabolic process regulation of cell motility regulation of locomotion regulation of cell migration cell migration cell motility locomotion cellular senescence negative regulation of cell population proliferation cell population proliferation negative regulation of biological process regulation of mesenchymal cell proliferation regulation of cell population proliferation mesenchymal cell proliferation negative regulation of cellular process negative regulation of mesenchymal cell proliferation regulation of localization regulation of protein localization regulation of protein localization to nucleus DNA double-strand break attachment to nuclear envelope chromosome localization chromosome attachment to the nuclear envelope cell cycle cell cycle process regulation of protein stability regulation of biological quality ventricular cardiac muscle cell differentiation multicellular organismal process cellular developmental process cardiac muscle cell development cell development muscle cell differentiation striated muscle tissue development multicellular organism development striated muscle cell development muscle cell development cell differentiation muscle tissue development cardiac cell development system development heart development cardiac muscle tissue development cardiac muscle cell differentiation tissue development ventricular cardiac muscle cell development cardiocyte differentiation circulatory system development striated muscle cell differentiation signaling negative regulation of signaling apoptotic mitochondrial changes regulation of signal transduction regulation of release of cytochrome c from mitochondria regulation of programmed cell death negative regulation of cell communication cell communication negative regulation of release of cytochrome c from mitochondria negative regulation of apoptotic signaling pathway signal transduction mitochondrion organization regulation of signaling negative regulation of cellular component organization negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of signal transduction apoptotic signaling pathway release of cytochrome c from mitochondria negative regulation of apoptotic process negative regulation of organelle organization regulation of response to stimulus regulation of mitochondrion organization regulation of cell communication apoptotic process programmed cell death regulation of apoptotic signaling pathway establishment or maintenance of microtubule cytoskeleton polarity establishment or maintenance of cytoskeleton polarity microtubule cytoskeleton organization microtubule-based process establishment or maintenance of cell polarity cytoskeleton organization chromatin organization chromatin remodeling negative regulation of macromolecule metabolic process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic negative regulation of muscle adaptation system process striated muscle adaptation negative regulation of muscle hypertrophy regulation of system process regulation of muscle hypertrophy regulation of cardiac muscle hypertrophy in response to stress muscle adaptation cardiac muscle adaptation regulation of response to stress cardiac muscle hypertrophy regulation of multicellular organismal process cardiac muscle hypertrophy in response to stress muscle hypertrophy regulation of muscle adaptation negative regulation of cardiac muscle hypertrophy in response to stress striated muscle hypertrophy regulation of muscle system process muscle system process regulation of cardiac muscle hypertrophy negative regulation of cardiac muscle adaptation negative regulation of multicellular organismal process regulation of cardiac muscle adaptation negative regulation of cardiac muscle hypertrophy muscle hypertrophy in response to stress extrinsic apoptotic signaling pathway negative regulation of extrinsic apoptotic signaling pathway cell surface receptor signaling pathway regulation of extrinsic apoptotic signaling pathway microtubule bundle formation protein localization to microtubule cytoskeleton protein localization to cytoskeleton protein localization to microtubule organizing center protein localization to centrosome regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly microtubule polymerization or depolymerization protein-containing complex assembly negative regulation of protein polymerization negative regulation of supramolecular fiber organization protein polymerization negative regulation of microtubule polymerization or depolymerization protein-containing complex organization negative regulation of cytoskeleton organization regulation of microtubule-based process negative regulation of microtubule polymerization microtubule polymerization regulation of cellular component biogenesis negative regulation of protein-containing complex assembly regulation of protein polymerization regulation of microtubule polymerization regulation of supramolecular fiber organization supramolecular fiber organization regulation of microtubule cytoskeleton organization mitotic metaphase chromosome alignment mitotic cell cycle metaphase chromosome alignment mitotic sister chromatid segregation chromosome segregation mitotic nuclear division attachment of spindle microtubules to kinetochore organelle fission attachment of mitotic spindle microtubules to kinetochore sister chromatid segregation nuclear division mitotic cell cycle process nuclear chromosome segregation cell division organelle assembly membraneless organelle assembly spindle assembly spindle organization plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cilium assembly non-motile cilium assembly cilium organization cell projection assembly protein localization to astral microtubule protein localization to microtubule protein localization to cytoplasmic microtubule protein localization to spindle microtubule protein localization to mitotic spindle spindle localization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation microtubule cytoskeleton organization involved in mitosis establishment of cell polarity establishment of mitotic spindle orientation positive regulation of organelle organization positive regulation of cellular component organization positive regulation of protein-containing complex assembly positive regulation of protein polymerization positive regulation of microtubule polymerization or depolymerization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization positive regulation of supramolecular fiber organization positive regulation of microtubule polymerization	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix organelle envelope nuclear envelope membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix organelle envelope nuclear envelope endomembrane system intracellular membraneless organelle nuclear speck ribonucleoprotein granule nuclear body nucleoplasm membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear membrane membrane organelle membrane polymeric cytoskeletal fiber intermediate filament cytoskeleton cytoskeleton intermediate filament supramolecular fiber supramolecular polymer cytoplasm cytosol lamin filament nuclear lamina nuclear periphery perinuclear region of cytoplasm site of double-strand break site of DNA damage chromosome anchoring junction cell junction focal adhesion cell-substrate junction spindle spindle midzone microtubule cytoskeleton centrosome microtubule organizing center mitotic spindle aster spindle microtubule cytoplasmic microtubule mitotic spindle astral microtubule end microtubule end mitotic spindle astral microtubule astral microtubule microtubule microtubule plus-end cell periphery cell projection plasma membrane plasma membrane region cell projection membrane plasma membrane bounded cell projection Golgi apparatus cell cortex cortical cytoskeleton cortical microtubule cytoskeleton mitotic spindle pole spindle pole cilium ciliary basal body mitotic spindle microtubule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR018039	Intermediate filament protein, conserved site	Conserved Site
A, B, C, D	IPR036415	Lamin tail domain superfamily	Homologous Superfamily
A, B, C, D	IPR039008	Intermediate filament, rod domain	Domain
A, B, C, D	IPR001322	Lamin tail domain	Domain
A, B, C, D	IPR001715	Calponin homology domain	Domain
A, B, C, D	IPR004953	EB1, C-terminal	Domain
A, B, C, D	IPR027328	Microtubule-associated protein RP/EB	Family
A, B, C, D	IPR036133	EB1, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR036872	CH domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q15691	Hutchinson-Gilford progeria syndrome limb-girdle muscular dystrophy Emery-Dreifuss muscular dystrophy congenital muscular dystrophy due to LMNA mutation dilated cardiomyopathy-hypergonadotropic hypogonadism syndrome Charcot-Marie-Tooth disease dilated cardiomyopathy heart-hand syndrome, Slovenian type Charcot-Marie-Tooth disease type 2B1 left ventricular noncompaction familial partial lipodystrophy lethal restrictive dermopathy localized scleroderma Emery-Dreifuss muscular dystrophy 3, autosomal recessive mandibuloacral dysplasia with type A lipodystrophy Hutchinson-Gilford progeria syndrome limb-girdle muscular dystrophy Emery-Dreifuss muscular dystrophy congenital muscular dystrophy due to LMNA mutation dilated cardiomyopathy-hypergonadotropic hypogonadism syndrome Charcot-Marie-Tooth disease dilated cardiomyopathy heart-hand syndrome, Slovenian type Charcot-Marie-Tooth disease type 2B1 left ventricular noncompaction familial partial lipodystrophy lethal restrictive dermopathy localized scleroderma Emery-Dreifuss muscular dystrophy 3, autosomal recessive mandibuloacral dysplasia with type A lipodystrophy myopathy congenital muscular dystrophy ventricular tachycardia arrhythmogenic right ventricular cardiomyopathy polycystic ovary syndrome sinoatrial block dilated cardiomyopathy 1A Emery-Dreifuss muscular dystrophy 2, autosomal dominant familial partial lipodystrophy, Dunnigan type atrioventricular block atypical Werner syndrome scleroderma Craniofacial Abnormalities cardiomyopathy peripheral neuropathy Werner syndrome linear scleroderma Sjogren syndrome diabetes mellitus lung carcinoma malignant pancreatic neoplasm tuberculosis X-linked Emery-Dreifuss muscular dystrophy muscle tissue disease glioblastoma heart disease osteosarcoma autosomal recessive Emery-Dreifuss muscular dystrophy peripheral nervous system disease laminopathy type Decaudain-Vigouroux plasma cell myeloma psoriasis lipodystrophy lung adenocarcinoma subependymal giant cell astrocytoma malignant ependymoma testicular cancer MALT lymphoma familial atrial fibrillation muscular disease atrioventricular dissociation neurodegenerative disease ovarian cancer hypertrophic cardiomyopathy sarcoidosis LMNA-related cardiocutaneous progeria syndrome lung cancer sudden cardiac arrest malignant glioma testicular germ cell tumor motor peripheral neuropathy arthrogryposis muscular dystrophy atypical teratoid rhabdoid tumor gastric carcinoma osteogenesis imperfecta pancreatic ductal adenocarcinoma cerebrovascular disorder intellectual disability pilocytic astrocytoma chronic obstructive pulmonary disease Weight Gain primitive neuroectodermal tumor astrocytic tumor coronary artery disease inflammatory bowel disease lymphoplasmacytic lymphoma medulloblastoma oligodendroglioma plasma cell myeloma atypical teratoid rhabdoid tumor dermatomyositis juvenile dermatomyositis malignant ependymoma myocardial ischemia osteosarcoma polycystic ovary syndrome breast carcinoma glioblastoma large cell medulloblastoma malignant glioma nicotine dependence ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.