7BGD | pdb_00007bgd

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth o]	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8072621	3001284	SCOP2B (2022-06-29)
I [auth l]	SCOP2B Superfamily	Nucleic acid-binding proteins	8098336	3000135	SCOP2B (2022-06-29)
H [auth k]	SCOP2B Superfamily	Translational machinery components	8099268	3000571	SCOP2B (2022-06-29)
G [auth h]	SCOP2B Superfamily	Ribosomal protein S8	8079049	3000709	SCOP2B (2022-06-29)
F [auth f]	SCOP2B Superfamily	Ribosomal protein S6	8066489	3001323	SCOP2B (2022-06-29)
D [auth d]	SCOP2B Superfamily	Alpha-L RNA-binding motif	8083392	3001473	SCOP2B (2022-06-29)
L [auth q]	SCOP2B Superfamily	Nucleic acid-binding proteins	8059272	3000135	SCOP2B (2022-06-29)
K [auth p]	SCOP2B Superfamily	Ribosomal protein S16	8066555	3000680	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth o]	Ribosomal_S15_1	e7bgdo1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Ribosomal_S15_1	ECOD (1.6)
I [auth l]	Ribosom_S12_S23	e7bgdl1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosom_S12_S23	ECOD (1.6)
H [auth k]	Ribosomal_S11	e7bgdk1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Ribosomal_S11	ECOD (1.6)
G [auth h]	Ribosomal_S8_N	e7bgdh2	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: Ribosomal_S8_N	ECOD (1.6)
G [auth h]	Ribosomal_S8_C	e7bgdh1	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: Ribosomal_S8_C	ECOD (1.6)
F [auth f]	Ribosomal_S6	e7bgdf1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S6 (From Topology)	T: Ribosomal protein S6	F: Ribosomal_S6	ECOD (1.6)
E [auth e]	Ribosomal_S5_C	e7bgde1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: Ribosomal_S5_C	ECOD (1.6)
E [auth e]	Ribosomal_S5	e7bgde2	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: Ribosomal_S5	ECOD (1.6)
D [auth d]	S4	e7bgdd1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: S4	ECOD (1.6)
C [auth b]	Ribosomal_S2_1	e7bgdb1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Ribosomal protein S2/SIS domain (From Topology)	T: Ribosomal protein S2/SIS domain	F: Ribosomal_S2_1	ECOD (1.6)
N [auth t]	Ribosomal_S20p	e7bgdt1	A: alpha bundles	X: Spectrin repeat-like	H: Ribosomal protein S20 (From Topology)	T: Ribosomal protein S20	F: Ribosomal_S20p	ECOD (1.6)
M [auth r]	Ribosomal_S18	e7bgdr1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Ribosomal_S18	ECOD (1.6)
L [auth q]	Ribosomal_S17_1	e7bgdq1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosomal_S17_1	ECOD (1.6)
K [auth p]	Ribosomal_S16_1	e7bgdp1	A: a+b two layers	X: Ribosomal protein S16 (From Topology)	H: Ribosomal protein S16 (From Topology)	T: Ribosomal protein S16	F: Ribosomal_S16_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth f]	3.30.70.60	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Ribosomal protein S6/Translation elongation factor EF1B	CATH (utative)
E [auth e]	3.30.230.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5	domain 2	CATH (utative)
D [auth d]	3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region	Chain A	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J [auth o]	30S ribosomal protein S15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
I [auth l]	30S ribosomal protein S12	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
H [auth k]	30S ribosomal protein S11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
G [auth h]	30S ribosomal protein S8	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
F [auth f]	30S ribosomal protein S6	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
E [auth e]	30S ribosomal protein S5	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
D [auth d]	30S ribosomal protein S4	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
C [auth b]	30S ribosomal protein S2	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
B [auth a]	16S ribosomal RNA	-	-	-
N [auth t]	30S ribosomal protein S20	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
M [auth r]	30S ribosomal protein S18	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
L [auth q]	30S ribosomal protein S17	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
K [auth p]	30S ribosomal protein S16	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
A	mRNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
J [auth o]	IPR005290	Small ribosomal subunit protein uS15, bacterial-type	Family
J [auth o]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
J [auth o]	IPR000589	Small ribosomal subunit protein uS15	Family
I [auth l]	IPR006032	Small ribosomal subunit protein uS12	Family
I [auth l]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
I [auth l]	IPR005679	Ribosomal protein uS12, bacterial-type	Family
H [auth k]	IPR001971	Small ribosomal subunit protein uS11	Family
H [auth k]	IPR019981	Small ribosomal subunit protein uS11, bacterial-type	Family
H [auth k]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
H [auth k]	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
G [auth h]	IPR000630	Small ribosomal subunit protein uS8	Family
G [auth h]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
G [auth h]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
F [auth f]	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
F [auth f]	IPR000529	Small ribosomal subunit protein bS6	Family
F [auth f]	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
F [auth f]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
F [auth f]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
E [auth e]	IPR000851	Small ribosomal subunit protein uS5	Family
E [auth e]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
E [auth e]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
E [auth e]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
E [auth e]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
E [auth e]	IPR005712	Small ribosomal subunit protein uS5, bacterial-type	Family
E [auth e]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
D [auth d]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
D [auth d]	IPR002942	RNA-binding S4 domain	Domain
D [auth d]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
D [auth d]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
D [auth d]	IPR005709	Small ribosomal subunit protein uS4, bacterial-type	Family
D [auth d]	IPR022801	Small ribosomal subunit protein uS4	Family
C [auth b]	IPR005706	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Family
C [auth b]	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
C [auth b]	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
C [auth b]	IPR001865	Small ribosomal subunit protein uS2	Family
N [auth t]	IPR036510	Small ribosomal subunit protein bS20 superfamily	Homologous Superfamily
N [auth t]	IPR002583	Small ribosomal subunit protein bS20	Family
M [auth r]	IPR001648	Small ribosomal subunit protein bS18	Family
M [auth r]	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
M [auth r]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
L [auth q]	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
L [auth q]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
L [auth q]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
L [auth q]	IPR000266	Small ribosomal subunit protein uS17	Family
K [auth p]	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
K [auth p]	IPR000307	Small ribosomal subunit protein bS16	Family