7CFD | pdb_00007cfd

Drosophila melanogaster Krimper eTud2-AubR15me2 complex

External Resource: Annotation

Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth B]	2.30.30.140	Mainly Beta	Roll	SH3 type barrels.		CATH (utative)
C	2.30.30.140	Mainly Beta	Roll	SH3 type barrels.		CATH (utative)
G [auth E]	2.30.30.140	Mainly Beta	Roll	SH3 type barrels.		CATH (utative)
I [auth F]	2.30.30.140	Mainly Beta	Roll	SH3 type barrels.		CATH (utative)
M [auth H]	2.30.30.140	Mainly Beta	Roll	SH3 type barrels.		CATH (utative)
F [auth D]	2.30.30.140	Mainly Beta	Roll	SH3 type barrels.		CATH (utative)
J [auth A]	2.30.30.140	Mainly Beta	Roll	SH3 type barrels.		CATH (utative)
K [auth G]	2.30.30.140	Mainly Beta	Roll	SH3 type barrels.		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], C, F [auth D], G [auth E], I [auth F], A [auth B], C, F [auth D], G [auth E], I [auth F], J [auth A], K [auth G], M [auth H]	PF00567	Tudor domain (TUDOR)	Tudor domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], C, F [auth D], G [auth E], I [auth F], A [auth B], C, F [auth D], G [auth E], I [auth F], J [auth A], K [auth G], M [auth H]	FI20010p1	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	negative regulation of oskar mRNA translation regulation of cellular process negative regulation of biological process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of oskar mRNA translation regulation of protein metabolic process negative regulation of oskar mRNA translation regulation of cellular process negative regulation of biological process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of oskar mRNA translation regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process sexual reproduction cellular developmental process reproductive process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction female gamete generation meiotic cell cycle process gamete generation cellular component organization karyosome formation cell differentiation anatomical structure development cell cycle cellular component organization or biogenesis cell cycle process developmental process meiotic cell cycle oogenesis multicellular organismal reproductive process chromosome organization oocyte karyosome formation chromosome organization involved in meiotic cell cycle organelle organization meiosis I cell cycle process germ cell development piRNA processing RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process RNA processing secondary piRNA processing nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulatory ncRNA processing regulatory ncRNA-mediated gene silencing positive regulation of metabolic process regulation of RNA metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA catabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of mRNA metabolic process transposition nucleobase-containing compound catabolic process positive regulation of RNA metabolic process post-transcriptional gene silencing nucleic acid catabolic process catabolic process positive regulation of biological process mRNA destabilization macromolecule catabolic process regulation of mRNA catabolic process transposable element silencing by mRNA destabilization positive regulation of cellular process retrotransposition transposable element silencing by piRNA-mediated mRNA destabilization RNA destabilization regulation of catabolic process mRNA metabolic process regulatory ncRNA-mediated post-transcriptional gene silencing positive regulation of catabolic process regulation of mRNA stability positive regulation of mRNA catabolic process regulation of RNA stability transposable element silencing piRNA-mediated gene silencing by mRNA destabilization regulation of mRNA metabolic process oocyte dorsal/ventral axis specification multicellular organismal process pattern specification process oocyte development multicellular organism development cell maturation oocyte axis specification oocyte construction dorsal/ventral axis specification developmental maturation regionalization dorsal/ventral pattern formation anatomical structure maturation oocyte differentiation axis specification	intracellular anatomical structure P granule cytoplasmic ribonucleoprotein granule germ plasm intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle pole plasm membraneless organelle cytoplasm supramolecular complex perinuclear region of cytoplasm
B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], N [auth M], O [auth Z], P [auth O]	Protein aubergine	RNA binding binding nucleic acid binding mRNA binding regulatory RNA binding piRNA binding endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism RNA binding binding nucleic acid binding mRNA binding regulatory RNA binding piRNA binding endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism hydrolase activity, acting on ester bonds hydrolase activity	regulation of cellular process negative regulation of biological process negative regulation of cellular process negative regulation of macromolecule metabolic process retrotransposition regulation of biosynthetic process regulation of biological process negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process gene expression transposition macromolecule biosynthetic process regulation of gene expression regulation of cellular process negative regulation of biological process negative regulation of cellular process negative regulation of macromolecule metabolic process retrotransposition regulation of biosynthetic process regulation of biological process negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process gene expression transposition macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process transposable element silencing regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA catabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of mRNA metabolic process primary metabolic process nucleobase-containing compound catabolic process positive regulation of RNA metabolic process nucleic acid catabolic process catabolic process positive regulation of biological process RNA metabolic process mRNA destabilization macromolecule catabolic process regulation of mRNA catabolic process transposable element silencing by mRNA destabilization positive regulation of cellular process RNA destabilization regulation of catabolic process mRNA metabolic process nucleic acid metabolic process positive regulation of catabolic process regulation of mRNA stability positive regulation of mRNA catabolic process regulation of RNA stability regulation of mRNA metabolic process cellular developmental process cell development pole cell development cell differentiation anatomical structure development oogenesis cellular process involved in reproduction in multicellular organism female gamete generation germ cell development regulatory ncRNA-mediated post-transcriptional gene silencing regulatory ncRNA-mediated gene silencing post-transcriptional gene silencing global gene silencing by mRNA cleavage piRNA-mediated gene silencing by mRNA destabilization multicellular organism development multicellular organismal process segmentation pattern specification process regionalization meiotic cell cycle process cellular component organization karyosome formation cell cycle cellular component organization or biogenesis cell cycle process meiotic cell cycle chromosome organization oocyte karyosome formation chromosome organization involved in meiotic cell cycle organelle organization meiosis I cell cycle process piRNA processing RNA biosynthetic process nucleic acid biosynthetic process RNA processing secondary piRNA processing nucleobase-containing compound biosynthetic process regulatory ncRNA processing mitotic nuclear division mitotic chromosome condensation organelle fission sister chromatid segregation mitotic cell cycle nuclear division mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation nuclear chromosome segregation chromosome segregation blastoderm segmentation anterior/posterior pattern specification anterior/posterior axis specification, embryo embryo development oocyte development tripartite regional subdivision cellular component biogenesis embryonic axis specification cellular component assembly anterior/posterior axis specification cell maturation embryonic pattern specification oocyte axis specification oocyte construction oocyte anterior/posterior axis specification cytoplasm organization developmental maturation pole plasm assembly anatomical structure maturation maternal determination of anterior/posterior axis, embryo oocyte differentiation axis specification localization intracellular protein localization pole plasm protein localization macromolecule localization positive regulation of protein metabolic process positive regulation of translation positive regulation of macromolecule biosynthetic process positive regulation of biosynthetic process translational initiation protein metabolic process regulation of translational initiation regulation of protein metabolic process translation positive regulation of gene expression positive regulation of cytoplasmic translational initiation regulation of translation regulation of cytoplasmic translational initiation cytoplasmic translation cytoplasmic translational initiation positive regulation of translational initiation regulation of cytoplasmic translation maternal-to-zygotic transition of gene expression maternal mRNA clearance oocyte maturation positive regulation of post-transcriptional gene silencing regulation of gene silencing by regulatory ncRNA positive regulation of post-transcriptional gene silencing by RNA regulation of post-transcriptional gene silencing by regulatory ncRNA regulation of post-transcriptional gene silencing P granule organization membraneless organelle assembly P granule assembly organelle assembly cellular component assembly involved in morphogenesis egg chorion assembly anatomical structure morphogenesis cellular anatomical entity morphogenesis anatomical structure formation involved in morphogenesis dorsal appendage formation external encapsulating structure organization chromatin organization chromatin remodeling heterochromatin formation epigenetic regulation of gene expression negative regulation of gene expression, epigenetic biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to external stimulus defense response to Gram-negative bacterium response to biotic stimulus defense response to bacterium response to bacterium response to stress response to external biotic stimulus positive regulation of oskar mRNA translation regulation of oskar mRNA translation cellularization pole cell formation transposable element silencing by piRNA-mediated mRNA destabilization maintenance of pole plasm mRNA location RNA localization pole plasm mRNA localization maintenance of RNA location pole plasm RNA localization maintenance of location intracellular mRNA localization involved in anterior/posterior axis specification cellular localization maintenance of location in cell intracellular mRNA localization intracellular mRNA localization involved in pattern specification process regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus regulation of response to external stimulus positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of immune response regulation of response to stress innate immune response regulation of immune system process positive regulation of immune system process positive regulation of innate immune response immune response regulation of innate immune response defense response to symbiont regulation of response to stimulus immune system process defense response to other organism positive regulation of defense response regulation of immune response regulation of localization pole plasm oskar mRNA localization regulation of intracellular mRNA localization regulation of pole plasm oskar mRNA localization	intracellular anatomical structure P granule cytoplasmic ribonucleoprotein granule germ plasm intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle pole plasm membraneless organelle cytoplasm supramolecular complex cytosol intracellular anatomical structure P granule cytoplasmic ribonucleoprotein granule germ plasm intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle pole plasm membraneless organelle cytoplasm supramolecular complex cytosol perinuclear region of cytoplasm membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], C, F [auth D], G [auth E], I [auth F], A [auth B], C, F [auth D], G [auth E], I [auth F], J [auth A], K [auth G], M [auth H]	IPR002999	Tudor domain	Domain
A [auth B], C, F [auth D], G [auth E], I [auth F], A [auth B], C, F [auth D], G [auth E], I [auth F], J [auth A], K [auth G], M [auth H]	IPR035437	SNase-like, OB-fold superfamily	Homologous Superfamily
A [auth B], C, F [auth D], G [auth E], I [auth F], A [auth B], C, F [auth D], G [auth E], I [auth F], J [auth A], K [auth G], M [auth H]	IPR000571	Zinc finger, CCCH-type	Domain
A [auth B], C, F [auth D], G [auth E], I [auth F], A [auth B], C, F [auth D], G [auth E], I [auth F], J [auth A], K [auth G], M [auth H]	IPR050621	Tudor domain-containing	Family
A [auth B], C, F [auth D], G [auth E], I [auth F], A [auth B], C, F [auth D], G [auth E], I [auth F], J [auth A], K [auth G], M [auth H]	IPR056482	Krimper, first tudor domain	Domain
B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], N [auth M], O [auth Z], P [auth O]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], N [auth M], O [auth Z], P [auth O]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], N [auth M], O [auth Z], P [auth O]	IPR003100	PAZ domain	Domain
B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], N [auth M], O [auth Z], P [auth O]	IPR036085	PAZ domain superfamily	Homologous Superfamily
B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], N [auth M], O [auth Z], P [auth O]	IPR003165	Piwi domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], B [auth I], D [auth J], E [auth K], H [auth L], L [auth N], N [auth M], O [auth Z], P [auth O]	2MR	Parent Component: ARG RESID: AA0067 PSI-MOD : symmetric dimethyl-L-arginine MOD:00076

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.