7E1B | pdb_00007e1b

Crystal structure of VbrR-DNA complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	CheY-like	8103050	3001156	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	C-terminal effector domain of the bipartite response regulators	8103032	3001179	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	C-terminal effector domain of the bipartite response regulators	8103032	3001179	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	CheY-like	8103050	3001156	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	C-terminal effector domain of the bipartite response regulators	8103032	3001179	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	CheY-like	8103050	3001156	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	C-terminal effector domain of the bipartite response regulators	8103032	3001179	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CheY-like	8103050	3001156	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CheY-like	8103050	3001156	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-terminal effector domain of the bipartite response regulators	8103032	3001179	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CheY-like	8103050	3001156	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	C-terminal effector domain of the bipartite response regulators	8103032	3001179	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CheY-like	8103050	3001156	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-terminal effector domain of the bipartite response regulators	8103032	3001179	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CheY-like	8103050	3001156	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	C-terminal effector domain of the bipartite response regulators	8103032	3001179	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Trans_reg_C	e7e1bH2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Trans_reg_C	ECOD (1.6)
H	Response_reg	e7e1bH1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
G	Trans_reg_C	e7e1bG1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Trans_reg_C	ECOD (1.6)
G	Response_reg	e7e1bG2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
F	Trans_reg_C	e7e1bF2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Trans_reg_C	ECOD (1.6)
F	Response_reg	e7e1bF1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
E	Trans_reg_C	e7e1bE1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Trans_reg_C	ECOD (1.6)
E	Response_reg	e7e1bE2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
D	Trans_reg_C	e7e1bD1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Trans_reg_C	ECOD (1.6)
D	Response_reg	e7e1bD2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
C	Trans_reg_C	e7e1bC1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Trans_reg_C	ECOD (1.6)
C	Response_reg	e7e1bC2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
B	Trans_reg_C	e7e1bB1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Trans_reg_C	ECOD (1.6)
B	Response_reg	e7e1bB2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
A	Trans_reg_C	e7e1bA1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Trans_reg_C	ECOD (1.6)
A	Response_reg	e7e1bA2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00072	Response regulator receiver domain (Response_reg)	Response regulator receiver domain	This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF00486	Transcriptional regulatory protein, C terminal (Trans_reg_C)	Transcriptional regulatory protein, C terminal		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J [auth Z], L [auth J]	DNA (26-MER)	-	-	-
I [auth Y], K [auth I]	DNA (26-MER)	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H	DNA-binding response regulator	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding molecular transducer activity phosphorelay response regulator activity cation binding ion binding metal ion binding small molecule binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex protein-DNA complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR039420	Transcriptional regulatory protein WalR-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001867	OmpR/PhoB-type DNA-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011006	CheY-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001789	Signal transduction response regulator, receiver domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016032	Signal transduction response regulator, C-terminal effector	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.