7KMT | pdb_00007kmt

Structure of the yeast TRAPPIII-Ypt1(Rab1) complex

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth A]SCOP2B SuperfamilyRas-like P-loop GTPases 8057264 3002022 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
D [auth I]SCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
C [auth G]SCOP2B SuperfamilySNARE-like 8090321 3001113 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth A]Rase7kmtA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
G [auth K]Sedlin_Ne7kmtK1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Sedlin_NECOD (1.6)
F [auth E]TRAPPe7kmtE1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
E [auth F]TRAPPe7kmtF1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
D [auth I]TRAPPe7kmtI1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
C [auth G]Sybindine7kmtG1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)
B [auth J]TRAPPe7kmtJ1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: TRAPPECOD (1.6)
A [auth H]Sybindine7kmtH1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: SybindinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H [auth A]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth B]PF12739ER-Golgi trafficking TRAPP I complex 85 kDa subunit (TRAPPC-Trs85)ER-Golgi trafficking TRAPP I complex 85 kDa subunit- Family
H [auth A]PF00071Ras family (Ras)Ras familyIncludes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motili ...Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1].
Domain
G [auth K]PF04628Sedlin, N-terminal conserved region (Sedlin_N)Sedlin, N-terminal conserved region- Family
F [auth E]PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
D [auth I],
E [auth F]		PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
C [auth G]PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family
B [auth J]PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
A [auth H]PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth B]Trafficking protein particle complex III-specific subunit 85-
H [auth A]GTP-binding protein YPT1
G [auth K]Trafficking protein particle complex subunit 20-
F [auth E]Trafficking protein particle complex subunit 33-
D [auth I],
E [auth F]		Trafficking protein particle complex subunit BET3-
C [auth G]Trafficking protein particle complex subunit BET5-
B [auth J]Trafficking protein particle complex subunit 31-
A [auth H]Trafficking protein particle complex subunit 23-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth B]IPR024420TRAPP III complex, Trs85Family
H [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth A]IPR005225Small GTP-binding domainDomain
H [auth A]IPR001806Small GTPaseFamily
H [auth A]IPR050227Ras-related protein RabFamily
G [auth K]IPR011012Longin-like domain superfamilyHomologous Superfamily
G [auth K]IPR006722Trafficking protein particle complex subunit 2Family
F [auth E]IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
F [auth E]IPR007194Transport protein particle (TRAPP) componentFamily
F [auth E]IPR037992TRAPP complex, Trs33 subunitFamily
D [auth I],
E [auth F]		IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
D [auth I],
E [auth F]		IPR007194Transport protein particle (TRAPP) componentFamily
D [auth I],
E [auth F]		IPR016721Bet3 familyFamily
C [auth G]IPR007233Trafficking protein particle complex subunitFamily
C [auth G]IPR011012Longin-like domain superfamilyHomologous Superfamily
B [auth J]IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
B [auth J]IPR016696TRAPP I complex, subunit 5Family
B [auth J]IPR007194Transport protein particle (TRAPP) componentFamily
A [auth H]IPR007233Trafficking protein particle complex subunitFamily
A [auth H]IPR011012Longin-like domain superfamilyHomologous Superfamily