7LFH | pdb_00007lfh

Cryo-EM structure of NLRP3 double-ring cage, 6-fold (12-mer)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ALRR_8_4e7lfhA1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
AF_UNCLASSIFIEDe7lfhA5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
AEUF07952e7lfhA3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
AF_UNCLASSIFIEDe7lfhA4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
ANACHTe7lfhA2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)
BLRR_8_4e7lfhB1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
BF_UNCLASSIFIEDe7lfhB5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
BEUF07952e7lfhB3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
BF_UNCLASSIFIEDe7lfhB4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
BNACHTe7lfhB2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)
CLRR_8_4e7lfhC1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
CF_UNCLASSIFIEDe7lfhC5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
CEUF07952e7lfhC3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
CF_UNCLASSIFIEDe7lfhC4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
CNACHTe7lfhC2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)
DLRR_8_4e7lfhD1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
DF_UNCLASSIFIEDe7lfhD5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
DEUF07952e7lfhD3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
DF_UNCLASSIFIEDe7lfhD4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
DNACHTe7lfhD2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)
ELRR_8_4e7lfhE1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
EF_UNCLASSIFIEDe7lfhE5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
EEUF07952e7lfhE3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
EF_UNCLASSIFIEDe7lfhE4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
ENACHTe7lfhE2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)
FLRR_8_4e7lfhF1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
FF_UNCLASSIFIEDe7lfhF5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
FEUF07952e7lfhF3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
FF_UNCLASSIFIEDe7lfhF4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
FNACHTe7lfhF2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)
GLRR_8_4e7lfhG1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
GF_UNCLASSIFIEDe7lfhG5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
GEUF07952e7lfhG3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
GF_UNCLASSIFIEDe7lfhG4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
GNACHTe7lfhG2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)
HLRR_8_4e7lfhH1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
HF_UNCLASSIFIEDe7lfhH5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
HEUF07952e7lfhH3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
HF_UNCLASSIFIEDe7lfhH4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
HNACHTe7lfhH2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)
ILRR_8_4e7lfhI1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
IF_UNCLASSIFIEDe7lfhI5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
IEUF07952e7lfhI3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
IF_UNCLASSIFIEDe7lfhI4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
INACHTe7lfhI2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)
JLRR_8_4e7lfhJ1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
JF_UNCLASSIFIEDe7lfhJ5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
JEUF07952e7lfhJ3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
JF_UNCLASSIFIEDe7lfhJ4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
JNACHTe7lfhJ2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)
KLRR_8_4e7lfhK1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
KF_UNCLASSIFIEDe7lfhK5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
KEUF07952e7lfhK3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
KF_UNCLASSIFIEDe7lfhK4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
KNACHTe7lfhK2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)
LLRR_8_4e7lfhL1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_8_4ECOD (1.6)
LF_UNCLASSIFIEDe7lfhL5 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
LEUF07952e7lfhL3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: EUF07952ECOD (1.6)
LF_UNCLASSIFIEDe7lfhL4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: F_UNCLASSIFIEDECOD (1.6)
LNACHTe7lfhL2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: NACHTECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF05729NACHT domain (NACHT)NACHT domainThis NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931. Domain
A, B, C, D, E
PF13516Leucine Rich repeat (LRR_6)Leucine Rich repeat- Repeat
A, B, C, D, E
PF14484Fish-specific NACHT associated domain (FISNA)Fish-specific NACHT associated domain- Family
A, B, C, D, E
PF17776NLRC4 helical domain HD2 (NLRC4_HD2)NLRC4 helical domain HD2This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1]. Domain
A, B, C, D, E
PF17779NOD2 winged helix domain (NOD2_WH)NOD2 winged helix domainThis winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
NACHT, LRR and PYD domains-containing protein 3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, D, E
IPR001611Leucine-rich repeatRepeat
A, B, C, D, E
IPR004020DAPIN domainDomain
A, B, C, D, E
IPR029495NACHT-associated domainDomain
A, B, C, D, E
IPR007111NACHT nucleoside triphosphataseDomain
A, B, C, D, E
IPR011029Death-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR041267NACHT, LRR and PYD domains-containing protein, helical domain HD2Domain
A, B, C, D, E
IPR041075NOD1/2, winged helix domainDomain
A, B, C, D, E
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR050637NLRP family, innate immunity and inflammation regulatorsFamily