7OTC | pdb_00007otc

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth j]SCOP2 FamilyRibosomal protein S10 8107431 4001240 SCOP2 (2022-06-29)
J [auth j]SCOP2 SuperfamilyRibosomal protein S10 8107432 3001336 SCOP2 (2022-06-29)
K [auth k]SCOP2 FamilyRibosomal protein L18p and S11 8107447 4000555 SCOP2 (2022-06-29)
K [auth k]SCOP2 SuperfamilyTranslational machinery components 8107448 3000571 SCOP2 (2022-06-29)
L [auth l]SCOP2 FamilyCold shock DNA-binding domain-like 8107401 4001909 SCOP2 (2022-06-29)
L [auth l]SCOP2 SuperfamilyNucleic acid-binding proteins 8107402 3000135 SCOP2 (2022-06-29)
M [auth m]SCOP2 FamilyRibosomal protein S13 8107415 4000260 SCOP2 (2022-06-29)
M [auth m]SCOP2 SuperfamilyS13-like H2TH domain 8107416 3000053 SCOP2 (2022-06-29)
N [auth n]SCOP2 FamilyRibosomal protein S14p/S29e 8107445 4003647 SCOP2 (2022-06-29)
N [auth n]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8107446 3000068 SCOP2 (2022-06-29)
O [auth o]SCOP2 Family30S Ribosomal protein S15 / 40S Ribosomal protein S13 8107449 4000767 SCOP2 (2022-06-29)
O [auth o]SCOP2 SuperfamilyS15/NS1 RNA-binding domain 8107450 3001284 SCOP2 (2022-06-29)
P [auth p]SCOP2 FamilyRibosomal protein S16 8107439 4001077 SCOP2 (2022-06-29)
P [auth p]SCOP2 SuperfamilyRibosomal protein S16 8107440 3000680 SCOP2 (2022-06-29)
Q [auth q]SCOP2 FamilyCold shock DNA-binding domain-like 8107435 4001909 SCOP2 (2022-06-29)
Q [auth q]SCOP2 SuperfamilyNucleic acid-binding proteins 8107436 3000135 SCOP2 (2022-06-29)
S [auth s]SCOP2 FamilyRibosomal protein S19 8107405 4001081 SCOP2 (2022-06-29)
S [auth s]SCOP2 SuperfamilyRibosomal protein S19 8107406 3000686 SCOP2 (2022-06-29)
B [auth b]SCOP2 FamilyRibosomal protein S2-like 8107461 4003744 SCOP2 (2022-06-29)
B [auth b]SCOP2 SuperfamilySIS domain/Ribosomal protein S2-like 8107462 3001397 SCOP2 (2022-06-29)
U [auth u]SCOP2 FamilyRibosomal protein S21 8107453 4006173 SCOP2 (2022-06-29)
U [auth u]SCOP2 SuperfamilyRibosomal protein S21 8107454 3002159 SCOP2 (2022-06-29)
Y [auth D]SCOP2 FamilyRibosomal protein L3 8107397 4002103 SCOP2 (2022-06-29)
Y [auth D]SCOP2 SuperfamilyTranslational proteins 8107398 3000811 SCOP2 (2022-06-29)
Z [auth E]SCOP2 FamilyRibosomal protein L4 8107419 4003628 SCOP2 (2022-06-29)
Z [auth E]SCOP2 SuperfamilyRibosomal protein L4 8107420 3001146 SCOP2 (2022-06-29)
AA [auth F]SCOP2 FamilyRibosomal protein L5 8107413 4001498 SCOP2 (2022-06-29)
AA [auth F]SCOP2 SuperfamilyRL5-like 8107414 3001709 SCOP2 (2022-06-29)
CA [auth J]SCOP2 FamilyRibosomal protein L13 8107411 4003623 SCOP2 (2022-06-29)
CA [auth J]SCOP2 SuperfamilyRibosomal protein L13 8107412 3001134 SCOP2 (2022-06-29)
EA [auth L]SCOP2 FamilyRibosomal proteins L15p and L18e 8107437 4003555 SCOP2 (2022-06-29)
EA [auth L]SCOP2 SuperfamilyRibosomal proteins L15p and L18e 8107438 3001045 SCOP2 (2022-06-29)
FA [auth M]SCOP2 FamilyRibosomal protein L16p 8107433 4003717 SCOP2 (2022-06-29)
FA [auth M]SCOP2 SuperfamilyRibosomal protein L16p/L10e 8107434 3000884 SCOP2 (2022-06-29)
GA [auth N]SCOP2 FamilyProkaryotic ribosomal protein L17 8107403 4003526 SCOP2 (2022-06-29)
GA [auth N]SCOP2 SuperfamilyProkaryotic ribosomal protein L17 8107404 3000995 SCOP2 (2022-06-29)
IA [auth P]SCOP2 FamilyRibosomal protein L19 8107427 4001761 SCOP2 (2022-06-29)
IA [auth P]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8107428 3000334 SCOP2 (2022-06-29)
JA [auth Q]SCOP2 FamilyRibosomal protein L20 8107459 4001930 SCOP2 (2022-06-29)
JA [auth Q]SCOP2 SuperfamilyRibosomal protein L20 8107460 3000563 SCOP2 (2022-06-29)
KA [auth R]SCOP2 FamilyRibosomal protein l21p 8107417 4001630 SCOP2 (2022-06-29)
KA [auth R]SCOP2 Superfamilyl21p-like 8107418 3002005 SCOP2 (2022-06-29)
LA [auth S]SCOP2 FamilyRibosomal protein L22 8107391 4001212 SCOP2 (2022-06-29)
LA [auth S]SCOP2 SuperfamilyRibosomal protein L22 8107392 3001078 SCOP2 (2022-06-29)
D [auth d]SCOP2 FamilyRibosomal protein S4 8107409 4001399 SCOP2 (2022-06-29)
D [auth d]SCOP2 SuperfamilyAlpha-L RNA-binding motif 8107410 3001473 SCOP2 (2022-06-29)
NA [auth U]SCOP2 FamilyRibosomal proteins L24p and L21e 8107421 4001752 SCOP2 (2022-06-29)
NA [auth U]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8107422 3000334 SCOP2 (2022-06-29)
OA [auth V]SCOP2 FamilyRibosomal protein L25-like 8107451 4002376 SCOP2 (2022-06-29)
OA [auth V]SCOP2 SuperfamilyRibosomal protein L25-like 8107452 3001161 SCOP2 (2022-06-29)
PA [auth W]SCOP2 FamilyRibosomal L27 protein 8107395 4001900 SCOP2 (2022-06-29)
PA [auth W]SCOP2 SuperfamilyRibosomal L27 protein-like 8107396 3000539 SCOP2 (2022-06-29)
QA [auth X]SCOP2 FamilyRibosomal protein L28 8107399 4003961 SCOP2 (2022-06-29)
QA [auth X]SCOP2 SuperfamilyL28p-like 8107400 3001966 SCOP2 (2022-06-29)
RA [auth Y]SCOP2 FamilyRibosomal protein L29 (L29p) 8107441 4000600 SCOP2 (2022-06-29)
RA [auth Y]SCOP2 SuperfamilyRibosomal protein L29 (L29p) 8107442 3000713 SCOP2 (2022-06-29)
SA [auth Z]SCOP2 FamilyRibosomal protein L30p/L7e 8107443 4001360 SCOP2 (2022-06-29)
SA [auth Z]SCOP2 SuperfamilyRibosomal protein L30p/L7e 8107444 3001378 SCOP2 (2022-06-29)
TA [auth 5]SCOP2 FamilyRibosomal protein L31p 8107465 4003966 SCOP2 (2022-06-29)
TA [auth 5]SCOP2 SuperfamilyL28p-like 8107466 3001966 SCOP2 (2022-06-29)
UA [auth 0]SCOP2 FamilyRibosomal protein L32p 8107457 4000508 SCOP2 (2022-06-29)
UA [auth 0]SCOP2 SuperfamilyZn-binding ribosomal proteins 8107458 3001320 SCOP2 (2022-06-29)
VA [auth 1]SCOP2 FamilyRibosomal protein L33p 8107425 4000511 SCOP2 (2022-06-29)
VA [auth 1]SCOP2 SuperfamilyZn-binding ribosomal proteins 8107426 3001320 SCOP2 (2022-06-29)
XA [auth 3]SCOP2 FamilyRibosomal protein L35p 8107455 4003406 SCOP2 (2022-06-29)
XA [auth 3]SCOP2 SuperfamilyL35p-like 8107456 3000790 SCOP2 (2022-06-29)
YA [auth 4]SCOP2 FamilyRibosomal protein L36 8107423 4003715 SCOP2 (2022-06-29)
YA [auth 4]SCOP2 SuperfamilyRibosomal protein L36 8107424 3001346 SCOP2 (2022-06-29)
F [auth f]SCOP2 FamilyRibosomal protein S6 8107463 4001337 SCOP2 (2022-06-29)
F [auth f]SCOP2 SuperfamilyRibosomal protein S6 8107464 3001323 SCOP2 (2022-06-29)
G [auth g]SCOP2 FamilyRibosomal protein S7 8107429 4001112 SCOP2 (2022-06-29)
G [auth g]SCOP2 SuperfamilyRibosomal protein S7 8107430 3000799 SCOP2 (2022-06-29)
H [auth h]SCOP2 FamilyRibosomal protein S8 8107407 4002027 SCOP2 (2022-06-29)
H [auth h]SCOP2 SuperfamilyRibosomal protein S8 8107408 3000709 SCOP2 (2022-06-29)
I [auth i]SCOP2 FamilyTranslational machinery components 8107393 4000951 SCOP2 (2022-06-29)
I [auth i]SCOP2 SuperfamilyRibosomal protein S5 domain 2-like 8107394 3000100 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth j]Ribosomal_S10e7otcj1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
K [auth k]Ribosomal_S11e7otck1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
L [auth l]Ribosom_S12_S23e7otcl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
M [auth m]Ribosomal_S13_1e7otcm1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
N [auth n]Ribosomal_S14_1e7otcn1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
O [auth o]Ribosomal_S15_1e7otco1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
P [auth p]Ribosomal_S16e7otcp1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
Q [auth q]Ribosomal_S17_1e7otcq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
R [auth r]Ribosomal_S18e7otcr1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
S [auth s]Ribosomal_S19e7otcs1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
B [auth b]Ribosomal_S2e7otcb1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
T [auth t]Ribosomal_S20pe7otct1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
U [auth u]Ribosomal_S21e7otcu1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21ECOD (1.6)
X [auth C]Ribosomal_L2_1e7otcC2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
X [auth C]Ribosomal_L2_Ce7otcC1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
Y [auth D]Ribosomal_L3e7otcD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
Z [auth E]Ribosomal_L4e7otcE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
AA [auth F]Ribosomal_L5_Ce7otcF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
BA [auth G]Ribosomal_L6e7otcG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
BA [auth G]Ribosomal_L6_1e7otcG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
CA [auth J]Ribosomal_L13e7otcJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
C [auth c]Ribosomal_S3_Ce7otcc1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
C [auth c]KH_2_1e7otcc2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
DA [auth K]Ribosomal_L14e7otcK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
EA [auth L]Ribosomal_L27Ae7otcL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
FA [auth M]Ribosomal_L16e7otcM1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
GA [auth N]Ribosomal_L17_1e7otcN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
HA [auth O]Ribosomal_L18pe7otcO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
IA [auth P]Ribosomal_L19e7otcP1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
JA [auth Q]Ribosomal_L20e7otcQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
KA [auth R]Ribosomal_L21pe7otcR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
LA [auth S]Ribosomal_L22e7otcS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
MA [auth T]Ribosomal_L23_2e7otcT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
D [auth d]S4e7otcd1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
NA [auth U]ribosomal_L24_1e7otcU1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
OA [auth V]Ribosomal_L25pe7otcV1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
PA [auth W]Ribosomal_L27e7otcW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
QA [auth X]Ribosomal_L28e7otcX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
RA [auth Y]Ribosomal_L29e7otcY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
SA [auth Z]Ribosomal_L30e7otcZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
TA [auth 5]Ribosomal_L31e7otc51 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
UA [auth 0]Ribosomal_L32pe7otc01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
VA [auth 1]Ribosomal_L33e7otc11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
WA [auth 2]Ribosomal_L34e7otc21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
E [auth e]Ribosomal_S5_Ce7otce1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
E [auth e]Ribosomal_S5e7otce2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
XA [auth 3]Ribosomal_L35pe7otc31 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
YA [auth 4]Ribosomal_L36e7otc41 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
ZA [auth w]GTP_EFTU_D2e7otcw2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2ECOD (1.6)
ZA [auth w]EFG_IVe7otcw4 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: EFG_IVECOD (1.6)
ZA [auth w]EFG_Ce7otcw5 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: EFG_CECOD (1.6)
ZA [auth w]EFG_IIe7otcw1 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: EFG_IIECOD (1.6)
ZA [auth w]MnmE_helical_2nde7otcw3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
F [auth f]Ribosomal_S6e7otcf1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
G [auth g]Ribosomal_S7_1e7otcg1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
H [auth h]Ribosomal_S8_Ne7otch1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
H [auth h]Ribosomal_S8_Ce7otch2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
I [auth i]Ribosomal_S9e7otci1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)