7OVB | pdb_00007ovb

L. pneumophila Type IV Coupling Complex (T4CC) with density for DotY N-terminal and middle domains

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	F_UNCLASSIFIED	e7ovbC1	A: few secondary structure elements	X: His-Me finger endonucleases (From Homology)	H: His-Me finger endonucleases	T: His-Me finger endonucleases	F: F_UNCLASSIFIED	ECOD (1.6)
B	F_UNCLASSIFIED	e7ovbB1	A: alpha complex topology	X: DotM cytosolic domain (From Topology)	H: DotM cytosolic domain (From Topology)	T: DotM cytosolic domain	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF12696	TraM recognition site of TraD and TraG (TraG-D_C)	TraM recognition site of TraD and TraG	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E	DotY	-	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm
D	DotZ	-	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm
C	IcmJ (DotN)	cation binding ion binding binding metal ion binding small molecule binding	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm
B	IcmP (DotM)	-	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization	cell periphery cellular anatomical structure plasma membrane membrane
A	IcmO (DotL)	-	localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E	IPR049927	DotY, N-terminal domain	Domain
E	IPR056465	DotY	Family
D	IPR049719	Type 4 apparatus protein DotZ-like	Family
C	IPR003615	HNH nuclease	Domain
C	IPR053558	Type IV secretion system Dot/Icm subcomplex protein	Family
B	IPR056464	DotM, C-terminal cytoplasmic domain	Domain
B	IPR049921	Type 4 apparatus protein DotM-llike	Family
A	IPR051162	Type IV secretion system component	Family
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR032689	TraD/TraG, TraM recognition site	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.