7V7C | pdb_00007v7c

CryoEM structure of DDB1-VprBP-Vpr-UNG2(94-313) complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyWD40 repeat-like 8052531 3001694 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyWD40 repeat-like 8051194 3001694 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyWD40 repeat-like 8051194 3001694 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyWD40 repeat-like 8052531 3001694 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyUracil-DNA glycosylase-like 8042482 3001106 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyUracil-DNA glycosylase-like 8042482 3001106 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BCPSF_A_Ne7v7cB1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
BMMS1_N_Ce7v7cB3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_CECOD (1.6)
BMMS1_N_Ne7v7cB4 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
BCPSF_A_Ce7v7cB2 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)
FCPSF_A_Ne7v7cF3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
FMMS1_N_Ce7v7cF1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_CECOD (1.6)
FMMS1_N_Ne7v7cF2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
FCPSF_A_Ce7v7cF4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)
CVPRe7v7cC1 A: alpha bundlesX: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology)H: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology)T: Viral accessory protein x (Vpx) / viral protein r (Vpr)F: VPRECOD (1.6)
GVPRe7v7cG1 A: alpha bundlesX: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology)H: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology)T: Viral accessory protein x (Vpx) / viral protein r (Vpr)F: VPRECOD (1.6)
DUDGe7v7cD1 A: a/b three-layered sandwichesX: Uracil-DNA glycosylase-like (From Topology)H: Uracil-DNA glycosylase-like (From Topology)T: Uracil-DNA glycosylase-likeF: UDGECOD (1.6)
HUDGe7v7cH1 A: a/b three-layered sandwichesX: Uracil-DNA glycosylase-like (From Topology)H: Uracil-DNA glycosylase-like (From Topology)T: Uracil-DNA glycosylase-likeF: UDGECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (utative)
F2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, F
PF10433RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st)RSE1/DDB1/CPSF1 first beta-propeller- Repeat
B, F
PF03178CPSF A subunit region (CPSF_A)CPSF A subunit region- Repeat
C, G
PF00522VPR/VPX protein (VPR)VPR/VPX protein- Family
D, H
PF03167Uracil DNA glycosylase superfamily (UDG)Uracil DNA glycosylase superfamilyDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E
DDB1- and CUL4-associated factor 1
B, F
DNA damage-binding protein 1
C, G
Protein Vpr-
D, H
Uracil-DNA glycosylase