7VPD

Cryo-EM structure of Streptomyces coelicolor RNAP-promoter open complex with one Zur dimers

Present annotations:

Domain Annotation: ECOD Classification
Gene Product Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RNA_pol_L	e7vpdA2	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: RNA_pol_L	ECOD (1.6)
A	RNA_pol_A_bac	e7vpdA1	A: a+b complex topology	X: Ribosomal protein TL5/L25 C-terminal domain-like	H: Insert subdomain of RNA polymerase alpha subunit (From Topology)	T: Insert subdomain of RNA polymerase alpha subunit	F: RNA_pol_A_bac	ECOD (1.6)
B	RNA_pol_L	e7vpdB1	A: a+b two layers	X: DCoH-like	H: RBP11-like subunits of RNA polymerase (From Topology)	T: RBP11-like subunits of RNA polymerase	F: RNA_pol_L	ECOD (1.6)
B	RNA_pol_A_bac	e7vpdB2	A: a+b complex topology	X: Ribosomal protein TL5/L25 C-terminal domain-like	H: Insert subdomain of RNA polymerase alpha subunit (From Topology)	T: Insert subdomain of RNA polymerase alpha subunit	F: RNA_pol_A_bac	ECOD (1.6)
K [auth S]	RNA_pol_A_CTD	e7vpdS1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: RNA_pol_A_CTD	ECOD (1.6)
C	RNA_pol_Rpb2_6_3rd_1	e7vpdC4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: RNA_pol_Rpb2_6_3rd_1	ECOD (1.6)
C	RNA_pol_Rpb2_6_2nd	e7vpdC5	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: RNA_pol_Rpb2_6_2nd	ECOD (1.6)
C	RNA_pol_Rpb2_6_1st	e7vpdC3	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: RNA_pol_Rpb2_6_1st	ECOD (1.6)
C	RNA_pol_Rpb2_3	e7vpdC1	A: a+b complex topology	X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: RNA_pol_Rpb2_3	ECOD (1.6)
C	RNA_pol_Rpb2_1	e7vpdC2	A: a+b complex topology	X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: insertion domain in beta subunit of DNA dependent RNA-polymerase	F: RNA_pol_Rpb2_1	ECOD (1.6)
C	RNA_pol_Rpb2_45	e7vpdC7	A: a+b complex topology	X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: barrel domain in beta subunit of DNA dependent RNA-polymerase	F: RNA_pol_Rpb2_45	ECOD (1.6)
C	RNA_pol_Rpb2_7	e7vpdC6	A: a+b complex topology	X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)	T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase	F: RNA_pol_Rpb2_7	ECOD (1.6)
E	RNA_pol_Rpb6	e7vpdE1	A: alpha arrays	X: RPB6/omega subunit-like (From Homology)	H: RPB6/omega subunit-like	T: RNA polymerase omega subunit	F: RNA_pol_Rpb6	ECOD (1.6)
F	Sigma70_r3	e7vpdF1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Sigma70_r3	ECOD (1.6)
F	Sigma70_r4	e7vpdF3	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Sigma70_r4	ECOD (1.6)
F	Sigma70_r2_2	e7vpdF2	A: alpha complex topology	X: Sigma2 domain-like	H: Sigma2 domain of RNA polymerase sigma factors (From Topology)	T: Sigma2 domain of RNA polymerase sigma factors	F: Sigma70_r2_2	ECOD (1.6)
G [auth M]	FUR	e7vpdM1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: FUR	ECOD (1.6)
H [auth N]	FUR	e7vpdN1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: FUR	ECOD (1.6)

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, K [auth S]	DNA-directed RNA polymerase subunit alpha	nucleic acid binding DNA binding binding organic cyclic compound binding heterocyclic compound binding catalytic activity DNA-directed 5'-3' RNA polymerase activity transferase activity transferase activity, transferring phosphorus-containing groups nucleotidyltransferase activity 5'-3' RNA polymerase activity RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid protein binding protein dimerization activity		intracellular anatomical structure cytoplasm cellular anatomical entity
C	DNA-directed RNA polymerase subunit beta	nucleic acid binding DNA binding binding organic cyclic compound binding heterocyclic compound binding catalytic activity DNA-directed 5'-3' RNA polymerase activity transferase activity transferase activity, transferring phosphorus-containing groups nucleotidyltransferase activity 5'-3' RNA polymerase activity RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid
D	DNA-directed RNA polymerase subunit beta'	nucleic acid binding DNA binding binding organic cyclic compound binding heterocyclic compound binding catalytic activity DNA-directed 5'-3' RNA polymerase activity transferase activity transferase activity, transferring phosphorus-containing groups nucleotidyltransferase activity 5'-3' RNA polymerase activity RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid zinc ion binding ion binding cation binding metal ion binding transition metal ion binding
E	DNA-directed RNA polymerase subunit omega	nucleic acid binding DNA binding binding organic cyclic compound binding heterocyclic compound binding catalytic activity DNA-directed 5'-3' RNA polymerase activity transferase activity transferase activity, transferring phosphorus-containing groups nucleotidyltransferase activity 5'-3' RNA polymerase activity RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid
F	RNA polymerase sigma factor SigA	nucleic acid binding DNA binding binding organic cyclic compound binding heterocyclic compound binding DNA-binding transcription factor activity sigma factor activity transcription regulator activity		intracellular anatomical structure cytoplasm cellular anatomical entity
G [auth M], H [auth N]	Putative metal uptake regulation protein	DNA-binding transcription factor activity transcription regulator activity binding zinc ion binding ion binding cation binding metal ion binding transition metal ion binding	metabolic process biosynthetic process regulation of biosynthetic process regulation of metabolic process secondary metabolic process regulation of secondary metabolic process secondary metabolite biosynthetic process regulation of biological process biological regulation regulation of secondary metabolite biosynthetic process	intracellular anatomical structure cytoplasm cytosol cellular anatomical entity protein-containing complex protein-DNA complex
I [auth O]	DNA (84-MER)	none	none	none
J [auth P]	DNA (84-MER)	none	none	none

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.