7ZKN | pdb_00007zkn

X-ray structure of the complex between human alpha thrombin and a pseudo-cyclic thrombin binding aptamer (TBA-NNp/DDp) - Crystal form gamma


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DTrypsine7zknD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: TrypsinECOD (1.6)
BTrypsine7zknB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: TrypsinECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D
PF00089Trypsin (Trypsin)TrypsinDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E,
F,
G,
H [auth I]
TBA-NNp/DDp---
B, D
Thrombin heavy chain
A, C
Thrombin light chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, D
IPR018992Thrombin light chainDomain
B, D
IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
B, D
IPR003966Prothrombin/thrombinFamily
B, D
IPR018114Serine proteases, trypsin family, histidine active siteActive Site
B, D
IPR009003Peptidase S1, PA clanHomologous Superfamily
B, D
IPR033116Serine proteases, trypsin family, serine active siteActive Site
B, D
IPR001254Serine proteases, trypsin domainDomain
B, D
IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
B, D
IPR000001KringleDomain
B, D
IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
B, D
IPR051659Serine Protease S1 Domain-Containing ProteinFamily
B, D
IPR018056Kringle, conserved siteConserved Site
B, D
IPR013806Kringle-like foldHomologous Superfamily
B, D
IPR038178Kringle superfamilyHomologous Superfamily
B, D
IPR001314Peptidase S1A, chymotrypsin familyFamily
B, D
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
A, C
IPR018992Thrombin light chainDomain
A, C
IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
A, C
IPR003966Prothrombin/thrombinFamily
A, C
IPR018114Serine proteases, trypsin family, histidine active siteActive Site
A, C
IPR009003Peptidase S1, PA clanHomologous Superfamily
A, C
IPR033116Serine proteases, trypsin family, serine active siteActive Site
A, C
IPR001254Serine proteases, trypsin domainDomain
A, C
IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
A, C
IPR000001KringleDomain
A, C
IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
A, C
IPR051659Serine Protease S1 Domain-Containing ProteinFamily
A, C
IPR018056Kringle, conserved siteConserved Site
A, C
IPR013806Kringle-like foldHomologous Superfamily
A, C
IPR038178Kringle superfamilyHomologous Superfamily
A, C
IPR001314Peptidase S1A, chymotrypsin familyFamily
A, C
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B, D
PharosP00734
A, C
PharosP00734