7ZNN | pdb_00007znn

Cryo-EM structure of RCMV-E E27 bound to human DDB1 (deltaBPB) and full-length rat STAT2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWD40 repeat-like 8051194 3001694 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth D]STAT_bind_Ne7znnD2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Common fold of diphtheria toxin/transcription factors/cytochrome fF: STAT_bind_NECOD (1.6)
C [auth D]STAT_bind_Ce7znnD1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: STAT_bind_CECOD (1.6)
C [auth D]STAT_alphae7znnD3 A: alpha bundlesX: STAT-likeH: STAT (From Topology)T: STATF: STAT_alphaECOD (1.6)
C [auth D]SH2e7znnD4 A: a+b two layersX: SH2 (From Topology)H: SH2 (From Topology)T: SH2F: SH2ECOD (1.6)
ACPSF_A_Ne7znnA3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
AMMS1_N_Ne7znnA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
ACPSF_A_Ce7znnA2 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth D]PF21354Signal transducer and activator of transcription, linker domain (STAT_linker)Signal transducer and activator of transcription, linker domainThis domain is found in Signal transducer and activator of transcription proteins (STAT) from animals. These proteins are activated in response to extracellular signals such as cytokines, growth factors and hormonal factors and translocate to the nuc ...This domain is found in Signal transducer and activator of transcription proteins (STAT) from animals. These proteins are activated in response to extracellular signals such as cytokines, growth factors and hormonal factors and translocate to the nucleus, where they bind to specific promoter sequences in target genes. This entry represents the all-helical linker domain that connects the DNA binding domain (Pfam:PF02864) and the SH2 domain (Pfam:PF00017) [1-5].
Domain
C [auth D]PF00017SH2 domain (SH2)SH2 domainDomain
C [auth D]PF01017STAT transcription factor, coiled-coil domain (STAT_alpha)STAT transcription factor, coiled-coil domainSTAT proteins (Signal Transducers and Activators of Transcription) are a family of transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors. STATs share 6 structurally and ...STAT proteins (Signal Transducers and Activators of Transcription) are a family of transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors. STATs share 6 structurally and functionally conserved domains including: an N-terminal domain (ND) that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain (CCD) that is implicated in protein-protein interactions; a DNA-binding domain (DBD) with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain. This entry represents the coiled-coil domain (CCD)
Domain
C [auth D]PF02864STAT protein, DNA binding domain (STAT_bind)STAT protein, DNA binding domainSTAT proteins (Signal Transducers and Activators of Transcription) are a family of transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors. This family represents the DNA ...STAT proteins (Signal Transducers and Activators of Transcription) are a family of transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors. This family represents the DNA binding domain of STAT, which has an ig-like fold. STAT proteins also include an SH2 domain Pfam:PF00017.
Domain
PF05999Herpesvirus U5-like family (Herpes_U5)Herpesvirus U5-like family- Family
PF10433RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st)RSE1/DDB1/CPSF1 first beta-propeller- Repeat
PF03178CPSF A subunit region (CPSF_A)CPSF A subunit region- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth D]Signal transducer and activator of transcription
B27a- - -
DNA damage-binding protein 1