8A9K | pdb_00008a9k

Cryo-EM structure of USP1-UAF1 bound to FANCI and mono-ubiquitinated FANCD2 with ML323 (consensus reconstruction)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyUbiquitin-like 8043829 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BFancD2e8a9kB1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: FancD2ECOD (1.6)
Cubiquitin_1e8a9kC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
DUCHe8a9kD1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: UCHECOD (1.6)
EANAPC4_WD40_18e8a9kE1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_18ECOD (1.6)
EKOG0308e8a9kE2 A: beta duplicates or obligate multimersX: WD repeat-containing protein 48 ancillary domain (From Topology)H: WD repeat-containing protein 48 ancillary domain (From Topology)T: WD repeat-containing protein 48 ancillary domainF: KOG0308ECOD (1.6)
EDUF3337e8a9kE3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: DUF3337ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF14676FANCI solenoid 2 (FANCI_S2)FANCI solenoid 2- Repeat
PF14677FANCI solenoid 3 (FANCI_S3)FANCI solenoid 3- Repeat
PF14678FANCI solenoid 4 (FANCI_S4)FANCI solenoid 4- Repeat
PF14679FANCI helical domain 1 (FANCI_HD1)FANCI helical domain 1- Repeat
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
PF11816Domain of unknown function (DUF3337) (DUF3337)Domain of unknown function (DUF3337)- Family
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Fanconi anemia group I protein
Fanconi anemia group D2 protein
Polyubiquitin-C
Ubiquitin carboxyl-terminal hydrolase 1
WD repeat-containing protein 48
F [auth S],
G [auth T]
DNA (61-MER)---

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ9NVI1
PharosQ9BXW9
PharosP0CG48
PharosO94782
PharosQ8TAF3