8AC6 | pdb_00008ac6

Nudaurelia capensis omega virus maturation intermediate captured at pH5.6 (insect cell expressed VLPs): medium class from symmetry expansion

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8104323	3000918	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8104323	3000918	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8104323	3000918	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8104323	3000918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_A21_1	e8ac6A1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Peptidase_A21_1	ECOD (1.6)
A	Peptidase_A21	e8ac6A2	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: Peptidase_A21	ECOD (1.6)
B	Peptidase_A21_1	e8ac6B1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Peptidase_A21_1	ECOD (1.6)
B	Peptidase_A21	e8ac6B2	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: Peptidase_A21	ECOD (1.6)
C	Peptidase_A21_1	e8ac6C1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Peptidase_A21_1	ECOD (1.6)
C	Peptidase_A21	e8ac6C2	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: Peptidase_A21	ECOD (1.6)
D	Peptidase_A21_1	e8ac6D2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Peptidase_A21_1	ECOD (1.6)
D	Peptidase_A21	e8ac6D1	A: beta sandwiches	X: Insertion domain in tetravirus coat protein (From Topology)	H: Insertion domain in tetravirus coat protein (From Topology)	T: Insertion domain in tetravirus coat protein	F: Peptidase_A21	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	p70	-	-	virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C, D	IPR005313	Peptidase N2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.