8AFP | pdb_00008afp

Structure of fibronectin 2 and 3 of L1CAM at 3.0 Angstrom

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	F_UNCLASSIFIED	e8afpA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: F_UNCLASSIFIED	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00041	Fibronectin type III domain (fn3)	Fibronectin type III domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Neural cell adhesion molecule L1	protein binding binding protein domain specific binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity axon guidance receptor activity	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process axon extension multicellular organismal process positive regulation of nervous system development regulation of growth regulation of cellular process axonogenesis regulation of cellular component size developmental growth cell projection organization regulation of cell differentiation cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process axon extension multicellular organismal process positive regulation of nervous system development regulation of growth regulation of cellular process axonogenesis regulation of cellular component size developmental growth cell projection organization regulation of cell differentiation regulation of neurogenesis neuron projection development regulation of cell development positive regulation of developmental process multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development positive regulation of cell projection organization regulation of biological quality positive regulation of developmental growth system development developmental process regulation of biological process regulation of cell projection organization positive regulation of cell development nervous system development developmental growth involved in morphogenesis generation of neurons positive regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cellular developmental process regulation of developmental process plasma membrane bounded cell projection morphogenesis positive regulation of biological process cell development cell growth cell morphogenesis cellular component organization regulation of axon extension regulation of nervous system development neurogenesis regulation of extent of cell growth positive regulation of cell differentiation regulation of axonogenesis positive regulation of neurogenesis regulation of multicellular organismal process positive regulation of axon extension cellular component organization or biogenesis positive regulation of cellular process positive regulation of axonogenesis regulation of anatomical structure morphogenesis regulation of cell size neuron projection extension regulation of multicellular organismal development regulation of developmental growth plasma membrane bounded cell projection organization developmental cell growth biological regulation growth positive regulation of cell growth axon development regulation of cell growth cell morphogenesis involved in neuron differentiation positive regulation of growth anatomical structure morphogenesis neuron development regulation of plasma membrane bounded cell projection organization regulation of anatomical structure size cell junction organization synapse organization cell migration cell motility chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion axon guidance neuron projection guidance cell-cell adhesion cell-cell adhesion via plasma-membrane adhesion molecules homophilic cell adhesion via plasma membrane adhesion molecules	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction growth cone axon cell projection distal axon neuron projection axonal growth cone plasma membrane bounded cell projection site of polarized growth cell surface cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction growth cone axon cell projection distal axon neuron projection axonal growth cone plasma membrane bounded cell projection site of polarized growth cell surface cell periphery plasma membrane membrane somatodendritic compartment dendrite dendritic tree cell body neuronal cell body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A	IPR003598	Immunoglobulin subtype 2	Domain
A	IPR051170	Neural and epithelial cell adhesion domain-containing protein	Family
A	IPR003599	Immunoglobulin domain subtype	Domain
A	IPR013098	Immunoglobulin I-set	Domain
A	IPR003961	Fibronectin type III	Domain
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR026966	Neurofascin/L1/NrCAM, C-terminal domain	Domain
A	IPR007110	Immunoglobulin-like domain	Domain
A	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P32004	MASA syndrome X-linked complicated corpus callosum dysgenesis aphasia renal cell carcinoma X-linked hydrocephalus with stenosis of the aqueduct of Sylvius intellectual disability collecting duct carcinoma Gait Disorders, Neurologic sarcomatoid renal cell carcinoma hydrocephalus chromophobe renal cell carcinoma hereditary spastic paraplegia papillary renal cell carcinoma Hirschsprung disease celiac disease MASA syndrome X-linked complicated corpus callosum dysgenesis aphasia renal cell carcinoma X-linked hydrocephalus with stenosis of the aqueduct of Sylvius intellectual disability collecting duct carcinoma Gait Disorders, Neurologic sarcomatoid renal cell carcinoma hydrocephalus chromophobe renal cell carcinoma hereditary spastic paraplegia papillary renal cell carcinoma Hirschsprung disease celiac disease Charcot-Marie-Tooth disease malignant colon neoplasm malignant mesothelioma medulloblastoma osteosarcoma adenoma paraplegia renal carcinoma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor interstitial cystitis malignant ependymoma neurodegenerative disease ovarian cancer pilocytic astrocytoma arthrogryposis bowel dysfunction intestinal disease clear cell renal carcinoma malignant glioma oligodendroglioma rheumatoid arthritis glioblastoma astrocytic tumor

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.