8F0A | pdb_00008f0a

Client-bound structure of a DegP trimer within a 12mer cage


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyPDZ domain-like 8040752 3000388 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTrypsin-like serine proteases 8040753 3000114 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTrypsin-like serine proteases 8040753 3000114 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPDZ domain-like 8040752 3000388 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPDZ domain-like 8040752 3000388 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyTrypsin-like serine proteases 8040753 3000114 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth c]Myb_DNA-bindinge8f0ac1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Myb_DNA-bindingECOD (1.6)
H [auth b]Myb_DNA-bindinge8f0ab1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Myb_DNA-bindingECOD (1.6)
G [auth a]Myb_DNA-bindinge8f0aa1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Myb_DNA-bindingECOD (1.6)
FPDZ_2e8f0aF1 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
EPDZ_2e8f0aE1 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
DPDZ_2e8f0aD1 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
CTrypsin_2e8f0aC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
CPDZ_2e8f0aC2 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
BTrypsin_2e8f0aB2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
BPDZ_2e8f0aB1 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
ATrypsin_2e8f0aA2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
APDZ_2e8f0aA1 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F2.30.42.10 Mainly Beta Roll Pdz3 Domain PDZ domainCATH (utative)
E2.30.42.10 Mainly Beta Roll Pdz3 Domain PDZ domainCATH (utative)
D2.30.42.10 Mainly Beta Roll Pdz3 Domain PDZ domainCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D, E, F
PF00595PDZ domain (PDZ)PDZ domainPDZ domains are found in diverse signaling proteins. Domain
A, B, C
PF00249Myb-like DNA-binding domain (Myb_DNA-binding)Myb-like DNA-binding domainThis family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1]. Domain
A, B, C
PF13365Trypsin-like peptidase domain (Trypsin_2)Trypsin-like peptidase domainThis family includes trypsin-like peptidase domains. Domain
A, B, C
PF00595PDZ domain (PDZ)PDZ domainPDZ domains are found in diverse signaling proteins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth a],
H [auth b],
I [auth c]
Telomeric repeat-binding factor 1
D, E, F
Periplasmic serine endoprotease DegP
A, B, C
Periplasmic serine endoprotease DegP

Pharos: Disease Associations Pharos Homepage Annotation