8F6F | pdb_00008f6f

Cryo-EM structure of a Zinc-loaded D51A mutant of the YiiP-Fab complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACation_effluxe8f6fA2 A: alpha bundlesX: Cation efflux protein transmembrane domain-like (From Topology)H: Cation efflux protein transmembrane domain-like (From Topology)T: Cation efflux protein transmembrane domain-likeF: Cation_effluxECOD (1.6)
AZT_dimere8f6fA1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: Cation efflux protein cytoplasmic domain-like (From Topology)T: Cation efflux protein cytoplasmic domain-likeF: ZT_dimerECOD (1.6)
D [auth B]Cation_effluxe8f6fB2 A: alpha bundlesX: Cation efflux protein transmembrane domain-like (From Topology)H: Cation efflux protein transmembrane domain-like (From Topology)T: Cation efflux protein transmembrane domain-likeF: Cation_effluxECOD (1.6)
D [auth B]ZT_dimere8f6fB1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: Cation efflux protein cytoplasmic domain-like (From Topology)T: Cation efflux protein cytoplasmic domain-likeF: ZT_dimerECOD (1.6)
B [auth C]C1-set_4e8f6fC2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
B [auth C]V-sete8f6fC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
EC1-set_4e8f6fE2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
EV-sete8f6fE1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
C [auth D]V-set_8e8f6fD2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
C [auth D]C1-set_1e8f6fD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
FV-set_8e8f6fF2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
FC1-set_1e8f6fF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth C],
E
Light ChainIGKV1 Kappacadmium and zinc efflux pump fiefSAbDab (2025-09-26)
C [auth D],
F
Heavy ChainIGHV3 -cadmium and zinc efflux pump fiefSAbDab (2025-09-26)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
D [auth B]
PF16916Dimerisation domain of Zinc Transporter (ZT_dimer)Dimerisation domain of Zinc TransporterZT_dimer is the dimerisation region of the whole molecule of zinc transporters since the full-length members form a homodimer during activity. The domain lies within the cytoplasm and exhibits an overall structural similarity with the copper metalloc ...ZT_dimer is the dimerisation region of the whole molecule of zinc transporters since the full-length members form a homodimer during activity. The domain lies within the cytoplasm and exhibits an overall structural similarity with the copper metallochaperone Hah1 UniProtKB:O00244, exhibiting an open alpha-beta domain with two alpha helices (H1 and H2) aligned on one side and a three-stranded mixed beta-sheet (S1 to S3) on the other side. The N-terminal part of the members is the Cation_efflux family, Pfam:PF01545 [1].
Domain
A,
D [auth B]
PF01545Cation efflux family (Cation_efflux)Cation efflux family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
D [auth B]
Cadmium and zinc efflux pump FieF
B [auth C],
E
Fab2r light chain---
C [auth D],
F
Fab2r heavy chain---

Membrane Protein Annotation: PDBTM PDBTM Database Homepage