8ICJ
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d8icja1 | All alpha proteins | SAM domain-like | DNA polymerase beta, N-terminal domain-like | DNA polymerase beta, N-terminal domain-like | DNA polymerase beta, N-terminal (8 kD)-domain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth A] | d8icja3 | All alpha proteins | SAM domain-like | PsbU/PolX domain-like | DNA polymerase beta-like, second domain | DNA polymerase beta | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth A] | d8icja4 | Alpha and beta proteins (a+b) | Nucleotidyltransferase | Nucleotidyltransferase | DNA polymerase beta-like | DNA polymerase beta, catalytic (31 kD) fragment | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | DNA polymerase beta, N-terminal domain-like | 8041159 | 3000524 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | PsbU/PolX domain-like | 8041160 | 3000893 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Nucleotidyltransferase-like | 8041162 | 3000129 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | DNA_pol_lambd_f | e8icjA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: DNA_pol_lambd_f | ECOD (1.6) |
C [auth A] | HHH_8 | e8icjA2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_8 | ECOD (1.6) |
C [auth A] | DNA_pol_B_palm | e8icjA3 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: DNA_pol_B_palm | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 1.10.150.110 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
C [auth A] | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
C [auth A] | 3.30.460.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (4.3.0) |
C [auth A] | 3.30.210.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A] | PF14716 | Helix-hairpin-helix domain (HHH_8) | Helix-hairpin-helix domain | - | Domain |
C [auth A] | PF14791 | DNA polymerase beta thumb (DNA_pol_B_thumb) | DNA polymerase beta thumb | - | Family |
C [auth A] | PF14792 | DNA polymerase beta palm (DNA_pol_B_palm) | DNA polymerase beta palm | The catalytic region of DNA polymerase beta is split into three domains. An N-terminal fingers domain, a central palm domain and a C-terminal thumb domain. This entry represents the palm domain [1]. | Domain |
C [auth A] | PF10391 | Fingers domain of DNA polymerase lambda (DNA_pol_lambd_f) | Fingers domain of DNA polymerase lambda | DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. DNA_pol_lambd_f is the centr ... | Domain |