IB [auth 8] PF16205 Ribosomal_S17 N-terminal (Ribosomal_S17_N) Ribosomal_S17 N-terminal - Family IB [auth 8] PF00366 Ribosomal protein S17 (Ribosomal_S17) Ribosomal protein S17 Domain PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e Domain PF01247 Ribosomal protein L35Ae (Ribosomal_L35Ae) Ribosomal protein L35Ae Domain PF01159 Ribosomal protein L6e (Ribosomal_L6e) Ribosomal protein L6e - Family PF00327 Ribosomal protein L30p/L7e (Ribosomal_L30) Ribosomal protein L30p/L7e This family includes prokaryotic L30 and eukaryotic L7. Domain PF00831 Ribosomal L29 protein (Ribosomal_L29) Ribosomal L29 protein - Family PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 Domain PF01158 Ribosomal protein L36e (Ribosomal_L36e) Ribosomal protein L36e - Family PF01907 Ribosomal protein L37e (Ribosomal_L37e) Ribosomal protein L37e - Family PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e Domain PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 Domain PF01781 Ribosomal L38e protein family (Ribosomal_L38e) Ribosomal L38e protein family - Family PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain PF00832 Ribosomal L39 protein (Ribosomal_L39) Ribosomal L39 protein - Family PF01294 Ribosomal protein L13e (Ribosomal_L13e) Ribosomal protein L13e - Family PF01020 Ribosomal L40e family (Ribosomal_L40e) Ribosomal L40e family Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. Domain PF01929 Ribosomal protein L14 (Ribosomal_L14e) Ribosomal protein L14 - Family PF05162 Ribosomal protein L41 (Ribosomal_L41) Ribosomal protein L41 - Family PF00827 Ribosomal L15 (Ribosomal_L15e) Ribosomal L15 - Family PF00935 Ribosomal protein L44 (Ribosomal_L44) Ribosomal protein L44 - Family PF00572 Ribosomal protein L13 (Ribosomal_L13) Ribosomal protein L13 - Family PF00276 Ribosomal protein L23 (Ribosomal_L23) Ribosomal protein L23 - Family PF01246 Ribosomal protein L24e (Ribosomal_L24e) Ribosomal protein L24e Domain PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain PF01780 Ribosomal L37ae protein family (Ribosomal_L37ae) Ribosomal L37ae protein family - Family PF01778 Ribosomal L28e protein family (Ribosomal_L28e) Ribosomal L28e protein family - Family PF17135 Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) Ribosomal protein 60S L18 and 50S L18e - Family PF01280 Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) Ribosomal protein L19e, N-terminal domain This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain PF00318 Ribosomal protein S2 (Ribosomal_S2) Ribosomal protein S2 - Family PF01775 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain PF00333 Ribosomal protein S5, N-terminal domain (Ribosomal_S5) Ribosomal protein S5, N-terminal domain Domain PF16906 Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) Ribosomal proteins L26 eukaryotic, L24P archaeal - Family PF00467 KOW motif (KOW) KOW motif - Family PF01777 Ribosomal L27e protein family (Ribosomal_L27e) Ribosomal L27e protein family - Family PF00467 KOW motif (KOW) KOW motif - Family PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain AB [auth 0] PF07650 KH domain (KH_2) KH domain Domain AB [auth 0] PF00189 Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) Ribosomal protein S3, C-terminal domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain BB [auth 1] PF00900 Ribosomal family S4e (Ribosomal_S4e) Ribosomal family S4e - Family BB [auth 1] PF16121 40S ribosomal protein S4 C-terminus (40S_S4_C) 40S ribosomal protein S4 C-terminus - Family BB [auth 1] PF08071 RS4NT (NUC023) domain (RS4NT) RS4NT (NUC023) domain This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain BB [auth 1] PF00467 KOW motif (KOW) KOW motif - Family CB [auth 2] PF00177 Ribosomal protein S7p/S5e (Ribosomal_S7) Ribosomal protein S7p/S5e This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain DB [auth 3] PF01092 Ribosomal protein S6e (Ribosomal_S6e) Ribosomal protein S6e - Family EB [auth 4] PF01251 Ribosomal protein S7e (Ribosomal_S7e) Ribosomal protein S7e - Family FB [auth 5] PF01201 Ribosomal protein S8e (Ribosomal_S8e) Ribosomal protein S8e - Family GB [auth 6] PF00163 Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) Ribosomal protein S4/S9 N-terminal domain - Family GB [auth 6] PF01479 S4 domain (S4) S4 domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Less Domain HB [auth 7] PF03501 Plectin/S10 domain (S10_plectin) Plectin/S10 domain This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Domain PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain Domain PF01779 Ribosomal L29e protein family (Ribosomal_L29e) Ribosomal L29e protein family - Family PF00181 Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) Ribosomal Proteins L2, RNA binding N-terminal domain Domain JB [auth 9] PF00312 Ribosomal protein S15 (Ribosomal_S15) Ribosomal protein S15 Domain KB [auth AA] PF00411 Ribosomal protein S11 (Ribosomal_S11) Ribosomal protein S11 - Family LB [auth AB] PF00203 Ribosomal protein S19 (Ribosomal_S19) Ribosomal protein S19 Domain MB [auth AC] PF00380 Ribosomal protein S9/S16 (Ribosomal_S9) Ribosomal protein S9/S16 - Family OB [auth AE] PF00416 Ribosomal protein S13/S18 (Ribosomal_S13) Ribosomal protein S13/S18 - Family PB [auth AF] PF01090 Ribosomal protein S19e (Ribosomal_S19e) Ribosomal protein S19e - Family QB [auth AG] PF00338 Ribosomal protein S10p/S20e (Ribosomal_S10) Ribosomal protein S10p/S20e This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain RB [auth AH] PF01249 Ribosomal protein S21e (Ribosomal_S21e) Ribosomal protein S21e - Family PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Less Domain SB [auth AI] PF00410 Ribosomal protein S8 (Ribosomal_S8) Ribosomal protein S8 Domain TB [auth AJ] PF00164 Ribosomal protein S12/S23 (Ribosom_S12_S23) Ribosomal protein S12/S23 This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain UB [auth AK] PF01282 Ribosomal protein S24e (Ribosomal_S24e) Ribosomal protein S24e - Family XB [auth AN] PF01667 Ribosomal protein S27 (Ribosomal_S27e) Ribosomal protein S27 - Family BC [auth AR] PF00400 WD domain, G-beta repeat (WD40) WD domain, G-beta repeat - Repeat PF14374 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) 60S ribosomal protein L4 C-terminal domain This family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain PF01198 Ribosomal protein L31e (Ribosomal_L31e) Ribosomal protein L31e - Family PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family PF17144 Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) Ribosomal large subunit proteins 60S L5, and 50S L18 - Family PF14204 Ribosomal L18 C-terminal region (Ribosomal_L18_c) Ribosomal L18 C-terminal region This domain is the C-terminal end of ribosomal L18/L5 proteins. Domain PF01655 Ribosomal protein L32 (Ribosomal_L32e) Ribosomal protein L32 - Family