8KG2 | pdb_00008kg2

Crystal structure of p97-N/D1 hexamer in complex with FAF1-UBX domain


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth O]SCOP2B SuperfamilyUbiquitin-like 8034467 3000157 SCOP2B (2022-06-29)
K [auth Q]SCOP2B SuperfamilyUbiquitin-like 8034467 3000157 SCOP2B (2022-06-29)
L [auth R]SCOP2B SuperfamilyUbiquitin-like 8034467 3000157 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyUbiquitin-like 8034467 3000157 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyUbiquitin-like 8034467 3000157 SCOP2B (2022-06-29)
USCOP2B SuperfamilyUbiquitin-like 8034467 3000157 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyUbiquitin-like 8034467 3000157 SCOP2B (2022-06-29)
G [auth M]SCOP2B SuperfamilyUbiquitin-like 8034467 3000157 SCOP2B (2022-06-29)
J [auth P]SCOP2B SuperfamilyUbiquitin-like 8034467 3000157 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyUbiquitin-like 8034467 3000157 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B,
C,
D,
E,
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
A,
B,
C,
D,
E,
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
A,
B,
C,
D,
E,
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
A,
B,
C,
D,
E,
PF02359Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)Cell division protein 48 (CDC48), N-terminal domainThis domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
PF00789UBX domain (UBX)UBX domainThis domain is present in ubiquitin-regulatory proteins and is a general Cdc48-interacting module [2]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B,
C,
D,
E,
Transitional endoplasmic reticulum ATPase
FAS-associated factor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
B,
C,
D,
E,
IPR003959ATPase, AAA-type, coreDomain
A,
B,
C,
D,
E,
IPR005938AAA ATPase, CDC48 familyFamily
A,
B,
C,
D,
E,
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A,
B,
C,
D,
E,
IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
A,
B,
C,
D,
E,
IPR003338CDC48, N-terminal subdomainDomain
A,
B,
C,
D,
E,
IPR004201CDC48, domain 2Domain
A,
B,
C,
D,
E,
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
A,
B,
C,
D,
E,
IPR003593AAA+ ATPase domainDomain
A,
B,
C,
D,
E,
IPR041569AAA ATPase, AAA+ lid domainDomain
A,
B,
C,
D,
E,
IPR050168AAA ATPase domain-containing proteinFamily
A,
B,
C,
D,
E,
IPR003960ATPase, AAA-type, conserved siteConserved Site
IPR044541FAF1, UBA-like domainDomain
IPR033043FAS-associated factor 1-like, UBX domainDomain
IPR049483Fas-associated factor 1/2-like, UAS domainDomain
IPR050730UBX domain-containing proteinFamily
IPR006577UASDomain
IPR001012UBX domainDomain
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
IPR036249Thioredoxin-like superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A,
B,
C,
D,
E,
PharosP55072
PharosQ9UNN5