8XQW | pdb_00008xqw

Cryo-EM structure of the Ycf2-FtsHi motor complex from Chlamydomonas reinhardtii in AMPPNP bound state

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
J	PF00550	Phosphopantetheine attachment site (PP-binding)	Phosphopantetheine attachment site	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.	Domain
H	PF05996	Ferredoxin-dependent bilin reductase (Fe_bilin_red)	Ferredoxin-dependent bilin reductase	-	Family
G	PF03747	ADP-ribosylglycohydrolase (ADP_ribosyl_GH)	ADP-ribosylglycohydrolase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J	ACP	phosphopantetheine-dependent carrier activity prosthetic group binding binding acyl carrier activity molecular carrier activity ACP phosphopantetheine attachment site binding	-	-
I	CrTam39	-	-	-
H	PcyA	cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity	phytochromobilin biosynthetic process tetrapyrrole metabolic process oxoacid metabolic process small molecule biosynthetic process dicarboxylic acid metabolic process carboxylic acid metabolic process organic acid metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process phytochromobilin metabolic process tetrapyrrole biosynthetic process biosynthetic process small molecule metabolic process metabolic process phytochromobilin biosynthetic process tetrapyrrole metabolic process oxoacid metabolic process small molecule biosynthetic process dicarboxylic acid metabolic process carboxylic acid metabolic process organic acid metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process phytochromobilin metabolic process tetrapyrrole biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process dicarboxylic acid biosynthetic process	-
G	ARHL	hydrolase activity catalytic activity	-	-
F	Ctap6	-	-	-
E	Ctap1	-	-	-
D	Ycf2	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
V [auth U]	UNK	-	-	-
U [auth V]	UNK	-	-	-
B, C	Fhl3	-	-	-
T	CrTam31	-	-	-
S	CrTam35	-	-	cellular anatomical structure membrane
R	DnaJ	-	-	-
Q	Tic22	-	-	-
P	Ctap7	-	-	-
O	CrTam49	-	-	cellular anatomical structure membrane
N	CrTam15	-	-	-
M	FADL	oxidoreductase activity catalytic activity	-	cellular anatomical structure membrane
L	CrTam34	-	-	cellular anatomical structure membrane
K	CrTam29	-	-	-
A	Fhl1	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
J	IPR009081	Phosphopantetheine binding ACP domain	Domain
J	IPR044813	Acyl carrier protein, chloroplastic	Family
J	IPR036736	ACP-like superfamily	Homologous Superfamily
J	IPR003231	Acyl carrier protein	Family
H	IPR009249	Ferredoxin-dependent bilin reductase	Family
G	IPR050792	ADP-ribosylglycohydrolase	Family
G	IPR036705	ADP-ribosylation/Crystallin J1 superfamily	Homologous Superfamily
G	IPR005502	ADP-ribosylation/Crystallin J1	Family
D	IPR050168	AAA ATPase domain-containing protein	Family
D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
M	IPR012171	Fatty acid desaturase	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
J	4HH	Parent Component: SER
V [auth U]	UNK
U [auth V]	UNK
B, C	TPO	Parent Component: THR RESID: AA0038 PSI-MOD : O-phospho-L-threonine MOD:00047
T	SEP	Parent Component: SER RESID: AA0038 , AA0037 PSI-MOD : O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046
S	SEP	Parent Component: SER RESID: AA0038 , AA0037 , AA0037 PSI-MOD : O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046 , O-phospho-L-serine MOD:00046
S	TPO	Parent Component: THR RESID: AA0038 , AA0037 , AA0037 , AA0038 PSI-MOD : O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046 , O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047
R	SEP	Parent Component: SER RESID: AA0038 , AA0037 , AA0037 , AA0038 , AA0037 PSI-MOD : O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046 , O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046
R	TPO	Parent Component: THR RESID: AA0038 , AA0037 , AA0037 , AA0038 , AA0037 , AA0038 PSI-MOD : O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046 , O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047