8XVH | pdb_00008xvh

Cryo-EM structure of ETBR bound with Endothelin1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth R]SCOP2B SuperfamilyG protein-coupled receptor-like 8091176 3000473 SCOP2B (2022-06-29)
F [auth R]SCOP2B SuperfamilyG protein-coupled receptor-like 8091176 3000473 SCOP2B (2022-06-29)
C [auth G]SCOP2B SuperfamilyTransducin (heterotrimeric G protein), gamma chain 8070798 3001771 SCOP2B (2022-06-29)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D [auth N]Heavy ChainIGHV3 -isoform gnas-2 of guanine nucleotide-binding protein g(s)subunit alpha isoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 SAbDab (2025-10-10)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth R]PF000017 transmembrane receptor (rhodopsin family) (7tm_1)7 transmembrane receptor (rhodopsin family)This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].
Domain
E [auth T]PF00322Endothelin family (Endothelin)Endothelin family- Family
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth R]Exo-alpha-sialidase,Endothelin receptor type B
E [auth T]Endothelin-1
D [auth N]Nanobody 35---
C [auth G]Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth R]IPR000499Endothelin receptor familyFamily
F [auth R]IPR001112Endothelin receptor BFamily
F [auth R]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
F [auth R]IPR017452GPCR, rhodopsin-like, 7TMDomain
F [auth R]IPR051193G-protein coupled endothelin receptorFamily
F [auth R]IPR011040SialidaseDomain
F [auth R]IPR023364Trans-sialidase, domain 3Homologous Superfamily
F [auth R]IPR036278Sialidase superfamilyHomologous Superfamily
F [auth R]IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
F [auth R]IPR004124Glycoside hydrolase, family 33, N-terminalDomain
F [auth R]IPR026856Sialidase familyFamily
E [auth T]IPR019764Endothelin-like toxin, conserved siteConserved Site
E [auth T]IPR001928Endothelin-like toxinDomain
E [auth T]IPR020475EndothelinFamily
C [auth G]IPR001770G-protein, gamma subunitFamily
C [auth G]IPR015898G-protein, gamma subunit-like domainDomain
C [auth G]IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
IPR019775WD40 repeat, conserved siteConserved Site
IPR001632G-protein beta subunit, WD40 repeatsDomain
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR016346G-protein subunit beta 1-5Family
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR001019Guanine nucleotide binding protein (G-protein), alpha subunitFamily
IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000367G-protein alpha subunit, group SFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
F [auth R]PharosP24530
E [auth T]PharosP05305
C [auth G]PharosP59768
PharosP62873
PharosP63092