8YHQ | pdb_00008yhq

Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in pyraclostrobin-bound state


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040294 3001831 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040292 3001831 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040294 3001831 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040292 3001831 SCOP2B (2022-06-29)
B [auth C]SCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040299 3000966 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyTransmembrane di-heme cytochromes 8040302 3000517 SCOP2B (2022-06-29)
G [auth L]SCOP2B SuperfamilyTransmembrane di-heme cytochromes 8040302 3000517 SCOP2B (2022-06-29)
G [auth L]SCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040299 3000966 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040300 3001831 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040297 3001831 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040297 3001831 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040300 3001831 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 8040305 3000762 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c 8040304 3000815 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyCytochrome c 8040304 3000815 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 8040305 3000762 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP transmembrane anchor 8040308 3000753 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP domain 8040307 3000233 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyISP transmembrane anchor 8040308 3000753 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyISP domain 8040307 3000233 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040312 3000806 SCOP2B (2022-06-29)
P [auth O]SCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040312 3000806 SCOP2B (2022-06-29)
H [auth G]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040315 3000797 SCOP2B (2022-06-29)
Q [auth P]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040315 3000797 SCOP2B (2022-06-29)
I [auth H]SCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040318 3000770 SCOP2B (2022-06-29)
O [auth Q]SCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040318 3000770 SCOP2B (2022-06-29)
J [auth I]SCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040319 3000779 SCOP2B (2022-06-29)
RSCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040319 3000779 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
K [auth J]
PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. Domain
A,
K [auth J]
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
B [auth C],
G [auth L]
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petDDomain
B [auth C],
G [auth L]
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petBDomain
C [auth B],
L [auth K]
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
D, M
PF02167Cytochrome C1 family (Cytochrom_C1)Cytochrome C1 family- Family
E, N
PF02921Ubiquinol cytochrome reductase transmembrane region (UCR_TM)Ubiquinol cytochrome reductase transmembrane region- Family
E, N
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
F,
P [auth O]
PF02320Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge)Ubiquinol-cytochrome C reductase hinge proteinThe ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c ...The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex.
Domain
H [auth G],
Q [auth P]
PF02271Ubiquinol-cytochrome C reductase complex 14kD subunit (UCR_14kD)Ubiquinol-cytochrome C reductase complex 14kD subunit- Family
I [auth H],
O [auth Q]
PF02939UcrQ family (UcrQ)UcrQ family- Family
J [auth I],
R
PF05365Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like (UCR_UQCRX_QCR9)Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like- Family
S, T
PF09796Ubiquinol-cytochrome-c reductase complex subunit (QCR10) (QCR10)Ubiquinol-cytochrome-c reductase complex subunit (QCR10)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
K [auth J]
COR1 isoform 1
B [auth C],
G [auth L]
Cytochrome b
C [auth B],
L [auth K]
Cytochrome b-c1 complex subunit 2, mitochondrial
D, M
quinol--cytochrome-c reductase
E, N
Cytochrome b-c1 complex subunit Rieske, mitochondrial
F,
P [auth O]
QCR6 isoform 1-
H [auth G],
Q [auth P]
Cytochrome b-c1 complex subunit 7-
I [auth H],
O [auth Q]
Cytochrome b-c1 complex subunit 8
J [auth I],
R
Cytochrome b-c1 complex subunit 9, mitochondrial-
S, T
Cytochrome b-c1 complex subunit 10, mitochondrial-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
K [auth J]
IPR007863Peptidase M16, C-terminalDomain
A,
K [auth J]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
A,
K [auth J]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
A,
K [auth J]
IPR011765Peptidase M16, N-terminalDomain
B [auth C],
G [auth L]
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
B [auth C],
G [auth L]
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
B [auth C],
G [auth L]
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
B [auth C],
G [auth L]
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
B [auth C],
G [auth L]
IPR005798Cytochrome b/b6, C-terminalDomain
B [auth C],
G [auth L]
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
B [auth C],
G [auth L]
IPR030689Cytochrome bFamily
B [auth C],
G [auth L]
IPR005797Cytochrome b/b6, N-terminal domainDomain
C [auth B],
L [auth K]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
C [auth B],
L [auth K]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
C [auth B],
L [auth K]
IPR011765Peptidase M16, N-terminalDomain
C [auth B],
L [auth K]
IPR001431Peptidase M16, zinc-binding siteBinding Site
D, M
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
D, M
IPR002326Cytochrome c1Family
D, M
IPR009056Cytochrome c-like domainDomain
D, M
IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily
E, N
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
E, N
IPR014349Rieske iron-sulphur proteinFamily
E, N
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
E, N
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
E, N
IPR005805Rieske iron-sulphur protein, C-terminalDomain
E, N
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
E, N
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
F,
P [auth O]
IPR023184Ubiquinol-cytochrome C reductase hinge domainDomain
F,
P [auth O]
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyHomologous Superfamily
H [auth G],
Q [auth P]
IPR003197Cytochrome b-c1 complex subunit 7Family
H [auth G],
Q [auth P]
IPR036544Cytochrome b-c1 complex subunit 7 superfamilyHomologous Superfamily
I [auth H],
O [auth Q]
IPR004205Cytochrome b-c1 complex subunit 8Family
I [auth H],
O [auth Q]
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyHomologous Superfamily
J [auth I],
R
IPR008027Cytochrome b-c1 complex subunit 9Family
J [auth I],
R
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyHomologous Superfamily
S, T
IPR019182Cytochrome b-c1 complex subunit 10, fungiFamily