8YW2 | pdb_00008yw2

Semliki Forest virus viron in complex with VLDLR


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AB [auth n]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
CA [auth O]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
DA [auth P]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
EA [auth Q]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
HA [auth T]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
KB [auth x]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
LB [auth y]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
N [auth AC]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
O [auth AD]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
P [auth AE]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
R [auth D]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
RA [auth d]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
SA [auth e]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
TA [auth f]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
BB [auth o]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
BB [auth o]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
CB [auth p]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
CB [auth p]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
DB [auth q]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
DB [auth q]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
F [auth 5]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
F [auth 5]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
IA [auth U]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
IA [auth U]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
JA [auth V]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
JA [auth V]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
KA [auth W]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
KA [auth W]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
S [auth E]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
S [auth E]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
T [auth F]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
T [auth F]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
U [auth G]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
U [auth G]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
V [auth H]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
V [auth H]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
VA [auth h]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
VA [auth h]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
WA [auth i]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
WA [auth i]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
ZA [auth m]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
ZA [auth m]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
K [auth A]SCOP2B SuperfamilyLDL receptor-like module 8035671 3000728 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00943Alphavirus E2 glycoprotein (Alpha_E2_glycop)Alphavirus E2 glycoprotein- Family
PF01563Alphavirus E3 glycoprotein (Alpha_E3_glycop)Alphavirus E3 glycoprotein- Family
PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain
PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain
PF01563Alphavirus E3 glycoprotein (Alpha_E3_glycop)Alphavirus E3 glycoprotein- Family
PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family
PF00943Alphavirus E2 glycoprotein (Alpha_E2_glycop)Alphavirus E2 glycoprotein- Family
PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain
PF01563Alphavirus E3 glycoprotein (Alpha_E3_glycop)Alphavirus E3 glycoprotein- Family
K [auth A]PF00057Low-density lipoprotein receptor domain class A (Ldl_recept_a)Low-density lipoprotein receptor domain class A- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Spike glycoprotein E3
capsid protein, partial
Spike glycoprotein E1
Spike glycoprotein E2
K [auth A]Very low-density lipoprotein receptor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR002533Alphavirus E3 spike glycoproteinDomain
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
IPR000936Alphavirus E2 glycoproteinFamily
IPR000930Peptidase S3, togavirinDomain
IPR002548Alphavirus E1 glycoproteinDomain
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR002533Alphavirus E3 spike glycoproteinDomain
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
IPR000936Alphavirus E2 glycoproteinFamily
IPR000930Peptidase S3, togavirinDomain
IPR002548Alphavirus E1 glycoproteinDomain
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR002533Alphavirus E3 spike glycoproteinDomain
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
IPR000936Alphavirus E2 glycoproteinFamily
IPR000930Peptidase S3, togavirinDomain
IPR002548Alphavirus E1 glycoproteinDomain
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR002533Alphavirus E3 spike glycoproteinDomain
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
IPR000936Alphavirus E2 glycoproteinFamily
IPR000930Peptidase S3, togavirinDomain
IPR002548Alphavirus E1 glycoproteinDomain
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
K [auth A]IPR011042Six-bladed beta-propeller, TolB-likeHomologous Superfamily
K [auth A]IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
K [auth A]IPR018097EGF-like calcium-binding, conserved siteConserved Site
K [auth A]IPR036055LDL receptor-like superfamilyHomologous Superfamily
K [auth A]IPR000742EGF-like domainDomain
K [auth A]IPR049883NOTCH1 EGF-like calcium-binding domainDomain
K [auth A]IPR051221Low-density lipoprotein receptor-relatedFamily
K [auth A]IPR000033LDLR class B repeatRepeat
K [auth A]IPR001881EGF-like calcium-binding domainDomain
K [auth A]IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
K [auth A]IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM