9C1K | pdb_00009c1k

Rhesus rotavirus (empty structure at 2.68 Angstrom resolution)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth A]	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O]	PF00980	Rotavirus major capsid protein VP6 (Rota_Capsid_VP6)	Rotavirus major capsid protein VP6	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O]	Intermediate capsid protein VP6	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding host cell surface binding host cell surface receptor binding	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell	virion component viral membrane viral envelope viral capsid icosahedral viral capsid T=13 icosahedral viral capsid viral intermediate capsid
C [auth A], D [auth B]	Inner capsid protein VP2	RNA binding binding nucleic acid binding	-	viral capsid icosahedral viral capsid virion component viral inner capsid viral nucleocapsid T=2 icosahedral viral capsid
A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], JA [auth u], KA [auth v], LA [auth w], MA [auth x], NA [auth y], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	Outer capsid glycoprotein VP7	cation binding ion binding binding metal ion binding small molecule binding	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid virion component viral outer capsid T=13 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O]	IPR001385	Rotavirus A/C, major capsid protein VP6	Family
CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O]	IPR008935	Virus capsid protein, alpha-helical	Homologous Superfamily
CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
C [auth A], D [auth B]	IPR007779	Rotavirus VP2	Family
A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], JA [auth u], KA [auth v], LA [auth w], MA [auth x], NA [auth y], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	IPR042207	Glycoprotein VP7, domain 1	Homologous Superfamily
A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], JA [auth u], KA [auth v], LA [auth w], MA [auth x], NA [auth y], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	IPR001963	Glycoprotein VP7	Family
A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], JA [auth u], KA [auth v], LA [auth w], MA [auth x], NA [auth y], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	IPR042210	Glycoprotein VP7, domain 2	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O]	FME	Parent Component: MET RESID: AA0021 , AA0566 PSI-MOD : N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.