9F4B | pdb_00009f4b

Pre-assembled baseplate cup of Klebsiella phage KP1 variant vB_Kpn_Lilla1


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07880Bacteriophage T4 gp9/10-like protein, N-terminal (T4_gp9_10_N)Bacteriophage T4 gp9/10-like protein, N-terminalThis entry represents the N-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment t ...This entry represents the N-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment to a host cell. The protein is active as a trimer, with each monomer being composed of three domains. The N-terminal domain consists of an extended polypeptide chain and two alpha helices. The alpha1 helix from each of the three monomers in the trimer interacts with its counterparts to form a coiled-coil structure. The middle domain is a seven-stranded beta-sandwich. This entry represents the region including these two domains. Noticeably, the long flexible region between N-terminal and middle domains may be required for the function of gp9 to transmit signals from the long tail fibres [2]. Together with gp11, gp10 initiates the assembly of wedges that then go on to associate with a hub to form the viral baseplate [1].
Domain
PF09215Bacteriophage T4, Gp8 (Phage-Gp8)Bacteriophage T4, Gp8Members of this family of viral baseplate structural proteins adopt a structure consisting of a three-layer beta-sandwich with two finger-like loops containing an alpha-helix at the opposite sides of the sandwich. The two peripheral, five-stranded, a ...Members of this family of viral baseplate structural proteins adopt a structure consisting of a three-layer beta-sandwich with two finger-like loops containing an alpha-helix at the opposite sides of the sandwich. The two peripheral, five-stranded, antiparallel beta-sheets are stacked against the middle, four-stranded, antiparallel beta-sheet. Attachment of this family of proteins to the baseplate during assembly creates a binding site for subsequent attachment of Gp6 [1].
Domain
PF21428Baseplate wedge protein gp7, helical domain (Gp7_helical)Baseplate wedge protein gp7, helical domainThis domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and inf ...This domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and infection. This protein is organised into six domains connected by flexible linkers. This entry represents helix-turn-helix motif that is part of the long linker connecting the second and fourth domains [1].
Domain
PF21427Baseplate wedge protein gp7, domain V (Gp7_5th)Baseplate wedge protein gp7, domain VThis domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and inf ...This domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and infection. This protein is organised into six domains connected by flexible linkers. This entry represents Domain V, which is an insertion into domain IV and consists of an eight-stranded beta- barrel followed by two short alpha-helices [1].
Domain
PF21456Baseplate wedge protein gp7, domain VI (Gp7_6th)Baseplate wedge protein gp7, domain VIThis domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and inf ...This domain is found in Baseplate wedge protein gp7 from Bacteriophage T4 and similar proteins predominantly found in tailed bacteriophages. Gp7 provides the primary control of the conformational changes of the viral baseplate during assembly and infection. This protein is organised into six domains connected by flexible linkers. This entry represents Domain VI, which forms a ribbon-like structure that interacts with N-terminal region of the protein Gp10 [1].
Domain
HA [auth BA]PF05488PAAR motif (PAAR_motif)PAAR motif- Motif
EA [auth BB],
FA [auth BC],
GA [auth BD]
PF22178Bacteriophage T4 gp5 C-terminal trimerisation domain (Gp5_trimer_C)Bacteriophage T4 gp5 C-terminal trimerisation domain- Repeat
EA [auth BB],
FA [auth BC],
GA [auth BD]
PF00959Phage lysozyme (Phage_lysozyme)Phage lysozymeThis family includes lambda phage lysozyme and E. coli endolysin. Domain
EA [auth BB],
FA [auth BC],
GA [auth BD]
PF06714Gp5 N-terminal OB domain (Gp5_OB)Gp5 N-terminal OB domainThis domain is found at the N terminus of the Gp5 baseplate protein of bacteriophage T4. This domain binds to the Gp27 protein [1]. This domain has the common OB fold [1]. Domain
PF11246Base plate wedge protein 53 (Phage_gp53)Base plate wedge protein 53- Family
ME [auth BE],
NE [auth BF],
OE [auth BG]
PF09096Baseplate structural protein, domain 2 (Phage-tail_2)Baseplate structural protein, domain 2Members of this family adopt a beta barrel structure with a Greek key topology, which is topologically similar to the FMN-binding split barrel. They are structural component of the viral baseplate, predominantly found in the structural protein gp27 [ ...Members of this family adopt a beta barrel structure with a Greek key topology, which is topologically similar to the FMN-binding split barrel. They are structural component of the viral baseplate, predominantly found in the structural protein gp27 [1].
Domain
ME [auth BE],
NE [auth BF],
OE [auth BG]
PF09097Baseplate structural protein, domain 1 (Phage-tail_1)Baseplate structural protein, domain 1Members of this family adopt a beta barrel structure with a Greek key topology, which is topologically similar to the FMN-binding split barrel. They are structural component of the viral baseplate, predominantly found in the structural protein gp27 [ ...Members of this family adopt a beta barrel structure with a Greek key topology, which is topologically similar to the FMN-binding split barrel. They are structural component of the viral baseplate, predominantly found in the structural protein gp27 [1].
Domain
PF09215Bacteriophage T4, Gp8 (Phage-Gp8)Bacteriophage T4, Gp8Members of this family of viral baseplate structural proteins adopt a structure consisting of a three-layer beta-sandwich with two finger-like loops containing an alpha-helix at the opposite sides of the sandwich. The two peripheral, five-stranded, a ...Members of this family of viral baseplate structural proteins adopt a structure consisting of a three-layer beta-sandwich with two finger-like loops containing an alpha-helix at the opposite sides of the sandwich. The two peripheral, five-stranded, antiparallel beta-sheets are stacked against the middle, four-stranded, antiparallel beta-sheet. Attachment of this family of proteins to the baseplate during assembly creates a binding site for subsequent attachment of Gp6 [1].
Domain
PF04965Baseplate wedge protein gp25 (GPW_gp25)Baseplate wedge protein gp25This family represents T4 phage gp25 protein and gp25-like proteins, found in several systems, including contractile tail bacteriophages, the type VI secretion system (T6SS) and R-type pyocins, which constitute a multiprotein tubular apparatus to att ...This family represents T4 phage gp25 protein and gp25-like proteins, found in several systems, including contractile tail bacteriophages, the type VI secretion system (T6SS) and R-type pyocins, which constitute a multiprotein tubular apparatus to attach to and penetrate host cell membranes. Gp25 is a component of the conserved wedge in the inner part of the baseplate and serves as a nucleus for sheath polymerisation, playing a critical role in sheath assembly and contraction [1,2]. The EPR motif (Glu-Pro-Arg, residues 85-87 of gp25) is conserved across all members of the family including orthologues from the RpoS-mediated general stress response system (called IraD) [3,4]. This motif interacts with the 'core bundle' composed of orthologues of T4 gp6 and gp7 proteins in contractile injection systems.
Domain
PF06841T4-like virus tail tube protein gp19 (Phage_T4_gp19)T4-like virus tail tube protein gp19- Family
PF08677GP11 baseplate wedge protein (GP11)GP11 baseplate wedge protein- Family
PF07880Bacteriophage T4 gp9/10-like protein, N-terminal (T4_gp9_10_N)Bacteriophage T4 gp9/10-like protein, N-terminalThis entry represents the N-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment t ...This entry represents the N-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment to a host cell. The protein is active as a trimer, with each monomer being composed of three domains. The N-terminal domain consists of an extended polypeptide chain and two alpha helices. The alpha1 helix from each of the three monomers in the trimer interacts with its counterparts to form a coiled-coil structure. The middle domain is a seven-stranded beta-sandwich. This entry represents the region including these two domains. Noticeably, the long flexible region between N-terminal and middle domains may be required for the function of gp9 to transmit signals from the long tail fibres [2]. Together with gp11, gp10 initiates the assembly of wedges that then go on to associate with a hub to form the viral baseplate [1].
Domain
PF08677GP11 baseplate wedge protein (GP11)GP11 baseplate wedge protein- Family
PF22670Baseplate wedge protein gp10 domain 3 (Gp10_D3)Baseplate wedge protein gp10 domain 3This domain is found in Baseplate wedge protein gp10 and related proteins. This domain folds into a beta-sandwich. Domain
PF07880Bacteriophage T4 gp9/10-like protein, N-terminal (T4_gp9_10_N)Bacteriophage T4 gp9/10-like protein, N-terminalThis entry represents the N-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment t ...This entry represents the N-terminal domain of Baseplate protein gp9 from Bacteriophage T4, a component of the viral baseplate [1]. Gp9 connects the long tail fibres of the virus to the baseplate and triggers tail contraction after viral attachment to a host cell. The protein is active as a trimer, with each monomer being composed of three domains. The N-terminal domain consists of an extended polypeptide chain and two alpha helices. The alpha1 helix from each of the three monomers in the trimer interacts with its counterparts to form a coiled-coil structure. The middle domain is a seven-stranded beta-sandwich. This entry represents the region including these two domains. Noticeably, the long flexible region between N-terminal and middle domains may be required for the function of gp9 to transmit signals from the long tail fibres [2]. Together with gp11, gp10 initiates the assembly of wedges that then go on to associate with a hub to form the viral baseplate [1].
Domain
PF21939Baseplate structural protein Gp10, C-terminal domain (Gp10_C)Baseplate structural protein Gp10, C-terminal domainThis entry represents the C-terminal domain (CTD) of baseplate structural protein Gp10 that assembles into trimeric structures. The core structure and assembly of Gp10 has structural similarity to that of the head domain of Gp11 and the receptor bind ...This entry represents the C-terminal domain (CTD) of baseplate structural protein Gp10 that assembles into trimeric structures. The core structure and assembly of Gp10 has structural similarity to that of the head domain of Gp11 and the receptor binding domain of Gp12 [1]. The monomeric CTD of Gp10 consists of an alpha-helix followed by a three-stranded, antiparallel beta-sheet, which is almost perpendicular to the helix. The three symmetry related beta-sheets interact with their first beta-strands in the trimer, thus creating a flower-like arrangement with the alpha-helices being the flower stem and the three beta-sheets being the petals.
Domain
PF21387Baseplate structural protein gp6, C-terminal domain I (Gp6_C-I)Baseplate structural protein gp6, C-terminal domain IBaseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This do ...Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This domain has been described as C-terminal domain I, and adopts a 2-layer beta-sandwich fold.
Domain
PF21871Baseplate structural protein gp6, C-terminal domain III (Gp6_C-III)Baseplate structural protein gp6, C-terminal domain IIIBaseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This do ...Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This domain has been described as C-terminal domain III.
Domain
PF21472Baseplate structural protein gp6, C-terminal domain II (gp6_C-domII)Baseplate structural protein gp6, C-terminal domain IIThis entry represents domain II found in the C-terminal of gp6 from bacteriophage T4, which adopts a beta-barrel fold. This protein is involved in tail assembly. It forms the gp25-(gp6)2-gp7 module, involved in sheath contraction [1,2]. Domain
PF21515Baseplate wedge protein gp6, domain II (Gp6_2nd)Baseplate wedge protein gp6, domain IIThis domain is found in Baseplate wedge protein gp6 from Enterobacteria phage T4 and similar sequences predominantly from tailed bacteriophages. Gp6 is a protein involved in tail assembly. This entry represents the first part of Domain II [1]. Domain
PF21379Baseplate wedge protein gp6-like, helical domain (Gp6-like_1st)Baseplate wedge protein gp6-like, helical domainThis domain is found in Baseplate wedge protein gp6 from Enterobacteria phage T4 and similar sequences predominantly from tailed bacteriophages. Gp6 is a protein involved in tail assembly. This entry represents its N-terminal helical domain [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
PE [auth BH],
QE [auth BI],
RE [auth BJ]
Baseplate hub subunit tail length determinator- - -
Baseplate wedge tail fiber connector- -
Baseplate wedge subunit- - -
Baseplate wedge protein gp7-
HA [auth BA]Phospholipase- - -
EA [auth BB],
FA [auth BC],
GA [auth BD]
Baseplate central spike protein
Baseplate wedge subunit- - -
Baseplate subunit- - -
Baseplate tail tube cap- - -
ME [auth BE],
NE [auth BF],
OE [auth BG]
Putative baseplate hub subunit- -
IraD/Gp25-like domain-containing protein- - -
Tail tube protein - -
Gp12 short tail fibers- - -
Baseplate wedge subunit and tail pin- - -
Baseplate wedge protein gp10-
Baseplate wedge protein gp6-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036240Gp9-like superfamilyHomologous Superfamily
IPR008987Baseplate structural protein Gp9/Gp10, N-terminal domainDomain
IPR027412Baseplate structural protein Gp9 C-terminal domain superfamilyHomologous Superfamily
IPR027411Baseplate structural protein Gp9/Gp10 middle domain superfamilyHomologous Superfamily
IPR036327Bacteriophage T4, Gp8 superfamilyHomologous Superfamily
IPR015298Bacteriophage T4, Gp8Domain
IPR034697Baseplate wedge protein gp7Family
IPR048812Baseplate wedge protein gp7, domain VIDomain
IPR048810Baseplate wedge protein gp7, helical domainDomain
IPR003961Fibronectin type IIIDomain
IPR048811Baseplate wedge protein gp7, domain VDomain
IPR036116Fibronectin type III superfamilyHomologous Superfamily
HA [auth BA]IPR008727PAAR motifRepeat
EA [auth BB],
FA [auth BC],
GA [auth BD]
IPR052619Bacteriophage lysozyme-likeFamily
EA [auth BB],
FA [auth BC],
GA [auth BD]
IPR009590Protein Gp5, N-terminal OB-fold domainDomain
EA [auth BB],
FA [auth BC],
GA [auth BD]
IPR023347Lysozyme domain superfamilyHomologous Superfamily
EA [auth BB],
FA [auth BC],
GA [auth BD]
IPR023346Lysozyme-like domain superfamilyHomologous Superfamily
EA [auth BB],
FA [auth BC],
GA [auth BD]
IPR046397Pre-baseplate central spike protein Gp5Family
EA [auth BB],
FA [auth BC],
GA [auth BD]
IPR001165T4-type lysozymeFamily
EA [auth BB],
FA [auth BC],
GA [auth BD]
IPR002196Glycoside hydrolase, family 24Family
EA [auth BB],
FA [auth BC],
GA [auth BD]
IPR054030Gp5/Type VI secretion system Vgr, C-terminal trimerisation domainDomain
IPR022607Baseplate wedge protein gp53, bacteriophage T4Family
IPR024389Baseplate tail-tube protein gp48, T4-like virusFamily
ME [auth BE],
NE [auth BF],
OE [auth BG]
IPR015180Bacteriophage T4, Gp27, baseplate hub, C-terminalDomain
ME [auth BE],
NE [auth BF],
OE [auth BG]
IPR043084Gp27, baseplate hub, domain 4Homologous Superfamily
ME [auth BE],
NE [auth BF],
OE [auth BG]
IPR043083Gp27, baseplate hub, domain 3Homologous Superfamily
ME [auth BE],
NE [auth BF],
OE [auth BG]
IPR043085Gp27, baseplate hub, domain 2Homologous Superfamily
ME [auth BE],
NE [auth BF],
OE [auth BG]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
ME [auth BE],
NE [auth BF],
OE [auth BG]
IPR015181Bacteriophage T4, Gp27, baseplate hub, N-terminalDomain
IPR007048IraD/Gp25-likeDomain
IPR010667Bacteriophage T4, Gp19, tail tubeFamily
IPR015982Baseplate structural protein Gp11, N-terminal domain superfamilyHomologous Superfamily
IPR015976Bacteriophage T4, Gp11, C-terminal finger domainHomologous Superfamily
IPR043180Baseplate structural protein Gp11, C-terminal domainHomologous Superfamily
IPR014791Baseplate structural protein Gp11Family
IPR036214Baseplate structural protein Gp11 superfamilyHomologous Superfamily
IPR036240Gp9-like superfamilyHomologous Superfamily
IPR008987Baseplate structural protein Gp9/Gp10, N-terminal domainDomain
IPR054430Baseplate wedge protein gp10, domain 3Domain
IPR056391Baseplate protein gp9-like, C-terminalDomain
IPR053827Baseplate structural protein Gp10, C-terminal domainDomain
IPR034695Baseplate wedge protein gp10Family
IPR054065Baseplate wedge protein gp6, C-terminal domain IIIDomain
IPR034698Baseplate wedge protein gp6Family
IPR049027Baseplate structural protein gp6, C-terminal domain IDomain
IPR049026Baseplate wedge protein gp6-like, N-terminal helical domainDomain
IPR049028Baseplate structural protein gp6, C-terminal domain IIDomain
IPR049029Baseplate wedge protein gp6, domain II, firstDomain