9FO3 | pdb_00009fo3

Structure of a gp140 SpyTag-SpyCatcher mi3 nanoparticle including mi3 density only.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
AA [auth a]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
AB [auth 0]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
DB [auth 3]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
GB [auth 6]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
TA [auth t]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
VA [auth v]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
ZA [auth z]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
YA [auth y]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
XA [auth x]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
WA [auth w]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
UA [auth u]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
SA [auth s]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
RA [auth r]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
QA [auth q]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
PA [auth p]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
MA [auth m]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
HB [auth 7]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
FB [auth 5]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
EB [auth 4]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
CB [auth 2]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
BB [auth 1]	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Aldolase	8033008	3000445	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	PF01081	KDPG and KHG aldolase (Aldolase)	KDPG and KHG aldolase	This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	CAP255 gp140 SpyTag-SpyCatcher mi3,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase	2-dehydro-3-deoxy-6-phosphogalactonate aldolase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity	carbohydrate metabolic process catabolic process oxoacid metabolic process carbohydrate catabolic process aldonic acid catabolic process carboxylic acid metabolic process primary metabolic process organic acid catabolic process organic acid metabolic process monocarboxylic acid catabolic process D-galactonate metabolic process galactonate catabolic process carboxylic acid catabolic process D-galactonate catabolic process carbohydrate metabolic process catabolic process oxoacid metabolic process carbohydrate catabolic process aldonic acid catabolic process carboxylic acid metabolic process primary metabolic process organic acid catabolic process organic acid metabolic process monocarboxylic acid catabolic process D-galactonate metabolic process galactonate catabolic process carboxylic acid catabolic process D-galactonate catabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process small molecule catabolic process galactonate metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR000887	KDPG/KHG aldolase	Family
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily