9GRC | pdb_00009grc

Cryo-EM structure of lipoprotein-bound LolCDE in nanodiscs


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyABC transporter-like P-loop ATPases 8102887 3002020 SCOP2B (2022-06-29)
C [auth F]SCOP2B SuperfamilyABC transporter-like P-loop ATPases 8102887 3002020 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth F],
D
PF00005ABC transporter (ABC_tran)ABC transporterABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.
Domain
B [auth E]PF12704MacB-like periplasmic core domain (MacB_PCD)MacB-like periplasmic core domainThis family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein [1]. Some structural similarity was found to the periplasmic domain of the AcrB multidrug eff ...This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein [1]. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
Domain
B [auth E]PF02687FtsX-like permease C-terminal (FtsX)FtsX-like permease C-terminalThis entry represents the C-terminal helices found in members of the ABC type 3 transporter family of permeases, including Cell division protein FtsX from Gram-negative and Gram-positive bacteria [1], Permease protein MacB [2], Lipoprotein-releasing ...This entry represents the C-terminal helices found in members of the ABC type 3 transporter family of permeases, including Cell division protein FtsX from Gram-negative and Gram-positive bacteria [1], Permease protein MacB [2], Lipoprotein-releasing system transmembrane protein LolC (Swiss:P57382) which has been shown to transport lipids targeted to the outer membrane across the inner membrane [3]. This region contains three transmembrane helices.
Domain
A [auth C]PF12704MacB-like periplasmic core domain (MacB_PCD)MacB-like periplasmic core domainThis family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein [1]. Some structural similarity was found to the periplasmic domain of the AcrB multidrug eff ...This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein [1]. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
Domain
A [auth C]PF02687FtsX-like permease C-terminal (FtsX)FtsX-like permease C-terminalThis entry represents the C-terminal helices found in members of the ABC type 3 transporter family of permeases, including Cell division protein FtsX from Gram-negative and Gram-positive bacteria [1], Permease protein MacB [2], Lipoprotein-releasing ...This entry represents the C-terminal helices found in members of the ABC type 3 transporter family of permeases, including Cell division protein FtsX from Gram-negative and Gram-positive bacteria [1], Permease protein MacB [2], Lipoprotein-releasing system transmembrane protein LolC (Swiss:P57382) which has been shown to transport lipids targeted to the outer membrane across the inner membrane [3]. This region contains three transmembrane helices.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth V]lipoprotein(LPP)
C [auth F],
D
Lipoprotein-releasing system ATP-binding protein LolD
B [auth E]Lipoprotein-releasing system transmembrane protein LolE
A [auth C]Lipoprotein-releasing system transmembrane protein LolC