9H9H | pdb_00009h9h

Complex 1 30S-IF1-IF2-IF3-GE81112


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth H]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
K [auth I]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
Q [auth O]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
R [auth P]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
S [auth Q]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
U [auth S]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyNucleic acid-binding proteins 8086090 3000135 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyTranslation initiation factor IF3, C-terminal domain 8035754 3001514 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
K [auth I]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
L [auth J]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
M [auth K]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
N [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
O [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
P [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
Q [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
R [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
S [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
U [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
V [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
PF01176Translation initiation factor 1A / IF-1 (eIF-1a)Translation initiation factor 1A / IF-1This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. Domain
PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Domain
PF04760Translation initiation factor IF-2, N-terminal region (IF2_N)Translation initiation factor IF-2, N-terminal regionThis conserved feature at the N-terminus of bacterial translation initiation factor IF2 has recently had its structure solved. It shows structural similarity to the tRNA anticodon Stem Contact Fold domains of the methionyl-tRNA and glutaminyl-tRNA s ...This conserved feature at the N-terminus of bacterial translation initiation factor IF2 has recently had its structure solved. It shows structural similarity to the tRNA anticodon Stem Contact Fold domains of the methionyl-tRNA and glutaminyl-tRNA synthetases, and a similar fold is also found in the B5 domain of the phenylalanine-tRNA synthetase.
Domain
PF22042Elongation factor G domain 2 (EF-G_D2)Elongation factor G domain 2Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in ot ...Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in other translation factors such as translation initiation factor IF-2, peptide chain release factor, etc.
Domain
PF11987Translation-initiation factor 2 (IF-2)Translation-initiation factor 2IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 pr ...IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 promotes the binding of the initiator tRNA to the A site in the smaller ribosomal subunit and catalyses the hydrolysis of GTP following initiation-complex formation [2].
Domain
PF00707Translation initiation factor IF-3, C-terminal domain (IF3_C)Translation initiation factor IF-3, C-terminal domainDomain
D [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
E [auth C]PF07650KH domain (KH_2)KH domainDomain
E [auth C]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
F [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
F [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
G [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
G [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
H [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]mRNA (5'-R(P*AP*AP*UP*G)-3')---
J [auth H]Small ribosomal subunit protein uS8
K [auth I]Small ribosomal subunit protein uS9
L [auth J]Small ribosomal subunit protein uS10
M [auth K]Small ribosomal subunit protein uS11
N [auth L]Small ribosomal subunit protein uS12
O [auth M]Small ribosomal subunit protein uS13
P [auth N]Small ribosomal subunit protein uS14
Q [auth O]Small ribosomal subunit protein uS15
R [auth P]Small ribosomal subunit protein bS16
S [auth Q]Small ribosomal subunit protein uS17
B [auth 3]t-RNA (77-MER)---
T [auth R]Small ribosomal subunit protein bS18
U [auth S]Small ribosomal subunit protein uS19
V [auth T]Small ribosomal subunit protein bS20
W [auth U]Small ribosomal subunit protein bS21
Translation initiation factor IF-1 -
Translation initiation factor IF-2 -
Translation initiation factor IF-3
C [auth A]16S RNA (1534-MER)---
D [auth B]Small ribosomal subunit protein uS2
E [auth C]Small ribosomal subunit protein uS3
F [auth D]Small ribosomal subunit protein uS4
G [auth E]Small ribosomal subunit protein uS5
H [auth F]Small ribosomal subunit protein bS6, fully modified isoform
I [auth G]Small ribosomal subunit protein uS7

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth H]IPR000630Small ribosomal subunit protein uS8Family
J [auth H]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
J [auth H]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
K [auth I]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
K [auth I]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
K [auth I]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
K [auth I]IPR000754Small ribosomal subunit protein uS9Family
K [auth I]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
L [auth J]IPR027486Small ribosomal subunit protein uS10 domainDomain
L [auth J]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
L [auth J]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
L [auth J]IPR001848Small ribosomal subunit protein uS10Family
M [auth K]IPR001971Small ribosomal subunit protein uS11Family
M [auth K]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
M [auth K]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
M [auth K]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
N [auth L]IPR005679Ribosomal protein uS12, bacterial-typeFamily
N [auth L]IPR006032Small ribosomal subunit protein uS12Family
N [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth M]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
O [auth M]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
O [auth M]IPR001892Small ribosomal subunit protein uS13Family
O [auth M]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
O [auth M]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
P [auth N]IPR001209Small ribosomal subunit protein uS14Family
P [auth N]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
P [auth N]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
Q [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
Q [auth O]IPR000589Small ribosomal subunit protein uS15Family
Q [auth O]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
R [auth P]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
R [auth P]IPR000307Small ribosomal subunit protein bS16Family
R [auth P]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
S [auth Q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
S [auth Q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
S [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth Q]IPR000266Small ribosomal subunit protein uS17Family
T [auth R]IPR001648Small ribosomal subunit protein bS18Family
T [auth R]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
T [auth R]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
U [auth S]IPR002222Small ribosomal subunit protein uS19Family
U [auth S]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
U [auth S]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
U [auth S]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
V [auth T]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
V [auth T]IPR002583Small ribosomal subunit protein bS20Family
W [auth U]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
W [auth U]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
W [auth U]IPR001911Small ribosomal subunit protein bS21Family
IPR003029S1 domainDomain
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR006196RNA-binding domain, S1, IF1 typeDomain
IPR004368Translation initiation factor IF-1Family
IPR005225Small GTP-binding domainDomain
IPR009061Putative DNA-binding domain superfamilyHomologous Superfamily
IPR000178Translation initiation factor IF-2, bacterial-likeFamily
IPR000795Translational (tr)-type GTP-binding domainDomain
IPR013575Initiation factor 2 associated domain, bacterialDomain
IPR053905Elongation factor G-like, domain IIDomain
IPR004161Translation elongation factor EFTu-like, domain 2Domain
IPR006847Translation initiation factor IF-2, N-terminalDomain
IPR044145Translation initiation factor IF-2, domain IIDomain
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR015760Translation initiation factor IF- 2Family
IPR036925Translation initiation factor IF-2, domain 3 superfamilyHomologous Superfamily
IPR023115Translation initiation factor IF- 2, domain 3Domain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR019815Translation initiation factor 3, C-terminalDomain
IPR001288Translation initiation factor 3Family
IPR019814Translation initiation factor 3, N-terminalDomain
IPR036788Translation initiation factor 3 (IF-3), C-terminal domain superfamilyHomologous Superfamily
IPR036787Translation initiation factor 3 (IF-3), N-terminal domain superfamilyHomologous Superfamily
IPR019813Translation initiation factor 3, conserved siteConserved Site
D [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
D [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
D [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
D [auth B]IPR001865Small ribosomal subunit protein uS2Family
E [auth C]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
E [auth C]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
E [auth C]IPR004087K Homology domainDomain
E [auth C]IPR004044K Homology domain, type 2Domain
E [auth C]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
E [auth C]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
E [auth C]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
E [auth C]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
F [auth D]IPR002942RNA-binding S4 domainDomain
F [auth D]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
F [auth D]IPR022801Small ribosomal subunit protein uS4Family
F [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
F [auth D]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
F [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
G [auth E]IPR000851Small ribosomal subunit protein uS5Family
G [auth E]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
G [auth E]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
G [auth E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
G [auth E]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
G [auth E]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
G [auth E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
H [auth F]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
H [auth F]IPR000529Small ribosomal subunit protein bS6Family
H [auth F]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
H [auth F]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
H [auth F]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
I [auth G]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
I [auth G]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
I [auth G]IPR000235Small ribosomal subunit protein uS7Family
I [auth G]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
I [auth G]IPR023798Small ribosomal subunit protein uS7 domainDomain