9JR3 | pdb_00009jr3

Cryo-EM structure of PTH-PTH1R-Gq (tilted state)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth R]SCOP2B SuperfamilyG protein-coupled receptor-like 8091124 3000473 SCOP2B (2022-06-29)
A [auth R]SCOP2B SuperfamilyG protein-coupled receptor-like 8091124 3000473 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth B]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
B [auth P]PF01279Parathyroid hormone family (Parathyroid)Parathyroid hormone family- Family
A [auth R]PF000027 transmembrane receptor (Secretin family) (7tm_2)7 transmembrane receptor (Secretin family)This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs). They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognise ...This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs). They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognised. Subfamily B1 contains classical hormone receptors, such as receptors for secretin and glucagon, that are all involved in cAMP-mediated signalling pathways. Subfamily B2 contains receptors with long extracellular N-termini, such as the leukocyte cell-surface antigen CD97 (Swiss:P48960); calcium-independent receptors for latrotoxin (such as Swiss:O94910), and brain-specific angiogenesis inhibitors (such as Swiss:O14514) amongst others. Subfamily B3 includes Methuselah and other Drosophila proteins (e.g. Swiss:P83119). Other than the typical seven-transmembrane region, characteristic structural features include an amino-terminal extracellular domain involved in ligand binding, and an intracellular loop (IC3) required for specific G-protein coupling [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth A]Guanine nucleotide-binding protein G(i) subunit alpha-1 (miniGq)
F [auth S]scFv16---
E [auth G]Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
D [auth B]Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
B [auth P]Parathyroid hormone
A [auth R]Parathyroid hormone/parathyroid hormone-related peptide receptor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth A]IPR001019Guanine nucleotide binding protein (G-protein), alpha subunitFamily
C [auth A]IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
C [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth A]IPR000367G-protein alpha subunit, group SFamily
E [auth G]IPR015898G-protein, gamma subunit-like domainDomain
E [auth G]IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
E [auth G]IPR001770G-protein, gamma subunitFamily
D [auth B]IPR019775WD40 repeat, conserved siteConserved Site
D [auth B]IPR001632G-protein beta subunit, WD40 repeatsDomain
D [auth B]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
D [auth B]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D [auth B]IPR016346G-protein subunit beta 1-5Family
D [auth B]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D [auth B]IPR001680WD40 repeatRepeat
B [auth P]IPR001415Parathyroid hormone/parathyroid hormone-related proteinFamily
B [auth P]IPR003625Parathyroid hormoneFamily
A [auth R]IPR017983GPCR, family 2, secretin-like, conserved siteConserved Site
A [auth R]IPR050332G-protein coupled receptor 2Family
A [auth R]IPR036445GPCR family 2, extracellular hormone receptor domain superfamilyHomologous Superfamily
A [auth R]IPR002170GPCR, family 2, parathyroid hormone receptorFamily
A [auth R]IPR000832GPCR, family 2, secretin-likeFamily
A [auth R]IPR017981GPCR, family 2-like, 7TMDomain
A [auth R]IPR001879GPCR, family 2, extracellular hormone receptor domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
C [auth A]PharosP63092
B [auth P]PharosP01270
A [auth R]PharosQ03431

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B [auth P]NH2 RESIDAA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100

PSI-MOD :  L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109