9LK5 | pdb_00009lk5

The structure of Lhcb8-C2S2 PSII-LHCII supercomplex from Arabidopsis thaliana

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098954 3000736 SCOP2B (2022-06-29)
W [auth a]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098954 3000736 SCOP2B (2022-06-29)
GA [auth k]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8098776 3001585 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8098776 3001585 SCOP2B (2022-06-29)
HA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098788 3001523 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098788 3001523 SCOP2B (2022-06-29)
IA [auth m]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8098838 3001573 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8098838 3001573 SCOP2B (2022-06-29)
JA [auth o]SCOP2B SuperfamilyOMPA barrel-like 8098590 3000208 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyOMPA barrel-like 8098590 3000208 SCOP2B (2022-06-29)
P [auth S]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100724 3000343 SCOP2B (2022-06-29)
LA [auth s]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100724 3000343 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like 8098770 3001674 SCOP2B (2022-06-29)
X [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098770 3001674 SCOP2B (2022-06-29)
QA [auth z]SCOP2B SuperfamilyPsbZ-like 8098778 3001624 SCOP2B (2022-06-29)
V [auth Z]SCOP2B SuperfamilyPsbZ-like 8098778 3001624 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPhotosystem II antenna protein-like 8098772 3001674 SCOP2B (2022-06-29)
Y [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098772 3001674 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098768 3000736 SCOP2B (2022-06-29)
Z [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098768 3000736 SCOP2B (2022-06-29)
AA [auth e]SCOP2B SuperfamilyCytochrome b559 subunits 8098774 3001602 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome b559 subunits 8098774 3001602 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCytochrome b559 subunits 8098830 3001602 SCOP2B (2022-06-29)
BA [auth f]SCOP2B SuperfamilyCytochrome b559 subunits 8098830 3001602 SCOP2B (2022-06-29)
DA [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8101549 3001547 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8101549 3001547 SCOP2B (2022-06-29)
EA [auth i]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8098834 3001590 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8098834 3001590 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
W [auth a]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
HA [auth l],
L		PF02419PsbL protein (PsbL)PsbL protein- Family
JA [auth o],
O		PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
LA [auth s],
P [auth S]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
MA [auth t],
Q [auth T]		PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
PA [auth x],
T [auth X]		PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
SA [auth y],
U [auth Y]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
QA [auth z],
V [auth Z]		PF01737YCF9 (Ycf9)YCF9- Family
KA [auth r],
TA [auth R]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
C,
Y [auth c]		PF00421Photosystem II protein (PSII)Photosystem II protein- Family
D,
Z [auth d]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
AA [auth e],
E		PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
CA [auth g],
G,
N,
RA [auth n]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
DA [auth h],
H		PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
EA [auth i],
I		PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
W [auth a]		Photosystem II protein D1
FA [auth j],
J		Photosystem II reaction center protein J-
GA [auth k],
K		Photosystem II reaction center protein K-
HA [auth l],
L		Photosystem II reaction center protein L-
IA [auth m],
M		Photosystem II reaction center protein M-
JA [auth o],
O		Oxygen-evolving enhancer protein 1-1, chloroplastic
LA [auth s],
P [auth S]		Chlorophyll a-b binding protein CP26, chloroplastic
MA [auth t],
Q [auth T]		Photosystem II reaction center protein T-
NA [auth u],
R [auth U]		Photosystem II 5 kDa protein, chloroplastic-
OA [auth w],
S [auth W]		Photosystem II reaction center W protein, chloroplastic-
PA [auth x],
T [auth X]		(thale cress) hypothetical protein-
B,
X [auth b]		Photosystem II CP47 reaction center protein
SA [auth y],
U [auth Y]		Chlorophyll a-b binding protein 2.2, chloroplastic
QA [auth z],
V [auth Z]		Photosystem II reaction center protein Z-
KA [auth r],
TA [auth R]		Chlorophyll a-b binding protein CP29.3, chloroplastic
C,
Y [auth c]		Photosystem II CP43 reaction center protein
D,
Z [auth d]		Photosystem II D2 protein
AA [auth e],
E		Cytochrome b559 subunit alpha
BA [auth f],
F		Cytochrome b559 subunit beta
CA [auth g],
G,
N,
RA [auth n]		Chlorophyll a-b binding protein 2, chloroplastic
DA [auth h],
H		Photosystem II reaction center protein H
EA [auth i],
I		Photosystem II reaction center protein I-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
W [auth a]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
W [auth a]		IPR005867Photosystem II protein D1Family
A,
W [auth a]		IPR000484Photosynthetic reaction centre, L/MFamily
A,
W [auth a]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A,
W [auth a]		IPR055266Photosystem II protein D1/D2Family
FA [auth j],
J		IPR002682Photosystem II PsbJFamily
FA [auth j],
J		IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
GA [auth k],
K		IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
GA [auth k],
K		IPR003687Photosystem II PsbKFamily
HA [auth l],
L		IPR003372Photosystem II PsbLFamily
HA [auth l],
L		IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
IA [auth m],
M		IPR007826Photosystem II PsbMFamily
IA [auth m],
M		IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
JA [auth o],
O		IPR002628Photosystem II extrinsic protein OFamily
JA [auth o],
O		IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
LA [auth s],
P [auth S]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
LA [auth s],
P [auth S]		IPR022796Chlorophyll A-B binding proteinFamily
MA [auth t],
Q [auth T]		IPR001743Photosystem II PsbTFamily
MA [auth t],
Q [auth T]		IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
NA [auth u],
R [auth U]		IPR040296Photosystem II 5kDa protein, chloroplasticFamily
OA [auth w],
S [auth W]		IPR009806Photosystem II PsbW, class 2Family
PA [auth x],
T [auth X]		IPR009518Photosystem II PsbXFamily
PA [auth x],
T [auth X]		IPR005024Snf7 familyFamily
B,
X [auth b]		IPR017486Photosystem II CP47 reaction centre proteinFamily
B,
X [auth b]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
X [auth b]		IPR000932Photosystem antenna protein-likeFamily
SA [auth y],
U [auth Y]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
SA [auth y],
U [auth Y]		IPR022796Chlorophyll A-B binding proteinFamily
QA [auth z],
V [auth Z]		IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
QA [auth z],
V [auth Z]		IPR002644Photosystem II PsbZ, reaction centreFamily
KA [auth r],
TA [auth R]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
KA [auth r],
TA [auth R]		IPR022796Chlorophyll A-B binding proteinFamily
C,
Y [auth c]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
Y [auth c]		IPR000932Photosystem antenna protein-likeFamily
C,
Y [auth c]		IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
Y [auth c]		IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
D,
Z [auth d]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D,
Z [auth d]		IPR005868Photosystem II D2Family
D,
Z [auth d]		IPR000484Photosynthetic reaction centre, L/MFamily
D,
Z [auth d]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
D,
Z [auth d]		IPR055266Photosystem II protein D1/D2Family
AA [auth e],
E		IPR013081Photosystem II cytochrome b559, N-terminalDomain
AA [auth e],
E		IPR006217Photosystem II cytochrome b559, alpha subunitFamily
AA [auth e],
E		IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
AA [auth e],
E		IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
AA [auth e],
E		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
BA [auth f],
F		IPR006241Photosystem II cytochrome b559, beta subunitFamily
BA [auth f],
F		IPR013081Photosystem II cytochrome b559, N-terminalDomain
BA [auth f],
F		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
CA [auth g],
G,
N,
RA [auth n]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
CA [auth g],
G,
N,
RA [auth n]		IPR022796Chlorophyll A-B binding proteinFamily
DA [auth h],
H		IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
DA [auth h],
H		IPR001056Photosystem II reaction centre protein HFamily
EA [auth i],
I		IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
EA [auth i],
I		IPR003686Photosystem II PsbIFamily