J [auth SJ] PF00338 Ribosomal protein S10p/S20e (Ribosomal_S10) Ribosomal protein S10p/S20e This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain K [auth SK] PF00411 Ribosomal protein S11 (Ribosomal_S11) Ribosomal protein S11 - Family L [auth SL] PF00164 Ribosomal protein S12/S23 (Ribosom_S12_S23) Ribosomal protein S12/S23 This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain M [auth SM] PF00416 Ribosomal protein S13/S18 (Ribosomal_S13) Ribosomal protein S13/S18 - Family N [auth SN] PF00253 Ribosomal protein S14p/S29e (Ribosomal_S14) Ribosomal protein S14p/S29e - Family O [auth SO] PF00312 Ribosomal protein S15 (Ribosomal_S15) Ribosomal protein S15 Domain P [auth SP] PF00886 Ribosomal protein S16 (Ribosomal_S16) Ribosomal protein S16 - Family Q [auth SQ] PF00366 Ribosomal protein S17 (Ribosomal_S17) Ribosomal protein S17 Domain R [auth SR] PF01084 Ribosomal protein S18 (Ribosomal_S18) Ribosomal protein S18 - Family S [auth SS] PF00203 Ribosomal protein S19 (Ribosomal_S19) Ribosomal protein S19 Domain B [auth SB] PF00318 Ribosomal protein S2 (Ribosomal_S2) Ribosomal protein S2 - Family T [auth ST] PF01649 Ribosomal protein S20 (Ribosomal_S20p) Ribosomal protein S20 - Family U [auth SU] PF01165 Ribosomal protein S21 (Ribosomal_S21) Ribosomal protein S21 - Family Y [auth LB] PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain Domain Y [auth LB] PF00181 Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) Ribosomal Proteins L2, RNA binding N-terminal domain Domain Y [auth LB] PF00830 Ribosomal L28 family (Ribosomal_L28) Ribosomal L28 family - Family Z [auth LC] PF00831 Ribosomal L29 protein (Ribosomal_L29) Ribosomal L29 protein - Family Z [auth LC] PF00297 Ribosomal protein L3 (Ribosomal_L3) Ribosomal protein L3 - Family AA [auth LD] PF00327 Ribosomal protein L30p/L7e (Ribosomal_L30) Ribosomal protein L30p/L7e This family includes prokaryotic L30 and eukaryotic L7. Domain AA [auth LD] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family BA [auth LE] PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 Domain BA [auth LE] PF01197 Ribosomal protein L31 (Ribosomal_L31) Ribosomal protein L31 - Family BA [auth LE] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain CA [auth LF] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 Domain CA [auth LF] PF01783 Ribosomal L32p protein family (Ribosomal_L32p) Ribosomal L32p protein family - Family C [auth SC] PF07650 KH domain (KH_2) KH domain Domain C [auth SC] PF00189 Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) Ribosomal protein S3, C-terminal domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain DA [auth LI] PF01281 Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) Ribosomal protein L9, N-terminal domain Domain DA [auth LI] PF03948 Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) Ribosomal protein L9, C-terminal domain Domain DA [auth LI] PF01632 Ribosomal protein L35 (Ribosomal_L35p) Ribosomal protein L35 - Family EA [auth LM] PF00572 Ribosomal protein L13 (Ribosomal_L13) Ribosomal protein L13 - Family FA [auth LN] PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e Domain GA [auth LO] PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain HA [auth LP] PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e Domain IA [auth LQ] PF01196 Ribosomal protein L17 (Ribosomal_L17) Ribosomal protein L17 - Family KA [auth LS] PF01245 Ribosomal protein L19 (Ribosomal_L19) Ribosomal protein L19 - Family LA [auth LT] PF00453 Ribosomal protein L20 (Ribosomal_L20) Ribosomal protein L20 - Family MA [auth LU] PF00829 Ribosomal prokaryotic L21 protein (Ribosomal_L21p) Ribosomal prokaryotic L21 protein - Family D [auth SD] PF00163 Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) Ribosomal protein S4/S9 N-terminal domain - Family D [auth SD] PF01479 S4 domain (S4) S4 domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Less Domain NA [auth LV] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain OA [auth LW] PF00276 Ribosomal protein L23 (Ribosomal_L23) Ribosomal protein L23 - Family PA [auth LX] PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) Ribosomal proteins 50S L24/mitochondrial 39S L24 - Family PA [auth LX] PF00467 KOW motif (KOW) KOW motif - Family QA [auth LY] PF01386 Ribosomal L25p family (Ribosomal_L25p) Ribosomal L25p family Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain E [auth SE] PF03719 Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) Ribosomal protein S5, C-terminal domain Domain E [auth SE] PF00333 Ribosomal protein S5, N-terminal domain (Ribosomal_S5) Ribosomal protein S5, N-terminal domain Domain F [auth SF] PF01250 Ribosomal protein S6 (Ribosomal_S6) Ribosomal protein S6 Domain H [auth SH] PF00410 Ribosomal protein S8 (Ribosomal_S8) Ribosomal protein S8 Domain I [auth SI] PF00380 Ribosomal protein S9/S16 (Ribosomal_S9) Ribosomal protein S9/S16 - Family