1E79 | pdb_00001e79

Bovine F1-ATPase inhibited by DCCD (dicyclohexylcarbodiimide)

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1E1Q	PDB CODE 1E1Q, NATIVE FROZEN BOVINE MITOCHONDRIAL F1-ATPASE

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		7		pH 7.00

Crystal Properties
Matthews coefficient	Solvent content
2.61	54

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 267.2	α = 90
b = 107.2	β = 90
c = 135.9	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC CCD		1999-06-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SRS BEAMLINE PX9.6		SRS	PX9.6

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.4	20	92.2	0.088	8.1	2.4		140093			36.405

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.4	2.53	68.6		0.331	2.1	1.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB CODE 1E1Q, NATIVE FROZEN BOVINE MITOCHONDRIAL F1-ATPASE	2.4	20	140093		92.2	0.225	0.2	0.281	RANDOM	58.084

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
p_transverse_tor	29.1
p_staggered_tor	15.7
p_scangle_it	3.59
p_scbond_it	2.62
p_planar_tor	2.6
p_mcangle_it	1.77
p_mcbond_it	1.0374
p_multtor_nbd	0.208
p_singtor_nbd	0.183
p_xyhbond_nbd	0.169
p_chiral_restr	0.09
p_hb_or_metal_coord	0.044
p_planar_d	0.021
p_angle_d	0.016
p_plane_restr	0.015
p_bond_d	0.006
p_angle_deg
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	25232
Nucleic Acid Atoms
Solvent Atoms	911
Heterogen Atoms	175

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
CCP4	data scaling
AMoRE	phasing