2J2P

L-ficolin complexed to N-acetyl-cystein (150mM)


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthew coefficientSolvent content
2.5350.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.4α = 90
b = 96.4β = 90
c = 140.29γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2006-02-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.819.9790.90.136.32.433431

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT2.819.973232617021000.2010.1970.27RANDOM29.32
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.20.10.2-0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.742
r_dihedral_angle_3_deg16.624
r_dihedral_angle_4_deg16.154
r_dihedral_angle_1_deg5.881
r_scangle_it1.454
r_mcangle_it1.339
r_angle_refined_deg1.098
r_scbond_it1.026
r_mcbond_it0.819
r_symmetry_vdw_refined0.531
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.742
r_dihedral_angle_3_deg16.624
r_dihedral_angle_4_deg16.154
r_dihedral_angle_1_deg5.881
r_scangle_it1.454
r_mcangle_it1.339
r_angle_refined_deg1.098
r_scbond_it1.026
r_mcbond_it0.819
r_symmetry_vdw_refined0.531
r_nbtor_refined0.332
r_nbd_refined0.254
r_symmetry_hbond_refined0.232
r_xyhbond_nbd_refined0.214
r_chiral_restr0.079
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_gen_planes_other
r_metal_ion_other
r_bond_other_d
r_symmetry_vdw_other
r_nbtor_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbd_other
r_mcbond_other
r_metal_ion_refined
r_mcangle_other
r_xyhbond_nbd_other
r_scbond_other
r_angle_other_deg
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10326
Nucleic Acid Atoms
Solvent Atoms78
Heterogen Atoms203

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling