2W98

CRYSTAL STRUCTURE OF HUMAN ZINC-BINDING ALCOHOL DEHYDROGENASE 1 (ZADH1) IN TERNARY COMPLEX WITH NADP AND PHENYLBUTAZONE


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
12.1M NA(MALATE)
Crystal Properties
Matthew coefficientSolvent content
2.5852.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 141.014α = 90
b = 82.793β = 99.77
c = 69.097γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2008-08-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8553.3799.20.0513.62.9663482
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.9595.50.165.22.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2VNA1.8553.464962131999.20.1590.1580.188RANDOM8.15
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.531.140.110.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.427
r_dihedral_angle_4_deg15.235
r_dihedral_angle_3_deg11.229
r_scangle_it6.681
r_dihedral_angle_1_deg5.591
r_scbond_it4.335
r_mcangle_it2.541
r_angle_refined_deg1.591
r_mcbond_it1.349
r_angle_other_deg0.895
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.427
r_dihedral_angle_4_deg15.235
r_dihedral_angle_3_deg11.229
r_scangle_it6.681
r_dihedral_angle_1_deg5.591
r_scbond_it4.335
r_mcangle_it2.541
r_angle_refined_deg1.591
r_mcbond_it1.349
r_angle_other_deg0.895
r_chiral_restr0.113
r_gen_planes_refined0.015
r_bond_refined_d0.012
r_bond_other_d0.002
r_gen_planes_other0.002
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_sphericity_bonded
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbd_refined
r_mcbond_other
r_nbd_other
r_mcangle_other
r_nbtor_refined
r_scbond_other
r_nbtor_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_symmetry_vdw_refined
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5382
Nucleic Acid Atoms
Solvent Atoms493
Heterogen Atoms293

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing