7DD4 | pdb_00007dd4

Solution structure of an RNA derived from the joint region of the TAR and PolyA stems of HIV-1 genomic RNA

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D NOESY	100 uM A60-10%13C,15N RNA (36-MER)	95% H2O/5% D2O	50 mM	6.5	1 atm	283	Bruker AVANCE 600
2	2D HOHAHA	100 uM A60-10%13C,15N RNA (36-MER)	95% H2O/5% D2O	50 mM	6.5	1 atm	283	Bruker AVANCE 600
5	2D 1H-13C HSQC	100 uM A60-10%13C,15N RNA (36-MER)	95% H2O/5% D2O	50 mM	6.5	1 atm	283	Bruker AVANCE 600
3	2D NOESY	100 uM A60-10%13C,15N RNA (36-MER)	95% H2O/5% D2O	50 mM	6.5	1 atm	283	Bruker AVANCE 800
4	2D HOHAHA	100 uM A60-10%13C,15N RNA (36-MER)	95% H2O/5% D2O	50 mM	6.5	1 atm	283	Bruker AVANCE 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	11
Representative Model	1 (minimized average structure)

Computation: NMR Software
#	Classification	Version	Software Name	Author
2	structure calculation	CNS	1.3	Brunger, Adams, Clore, Gros, Nilges and Read
3	chemical shift assignment	Sparky		Goddard
4	peak picking	Sparky		Goddard

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.