Navigation Tabs Crystal structure of CmABCB1 in lipidic mesophase revealed by LCP-SFX
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6A6M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 293 Micro-crystals were generated by incubation of 50 microL LCP containing the protein and 7.7 MAG/cholesterol in a 1.5 mL tube with 0.7 mL crystallization solution containing 26-30% 1,4-butanediol, 0.1 M Tris pH 7.9, 0.2 M zinc acetate.
Crystal Properties Matthews coefficient Solvent content 3.62 66.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.9 α = 90 b = 285.9 β = 90 c = 86.8 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD MPCCD 2015-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SACLA BEAMLINE BL3 1.771 SACLA BL3
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 injection
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 45.45 100 0.0567 12.37 2149 47845
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.22 2.26 100 0.8484 1.43 591
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6A6M 2.2 20.001 47761 2491 99.812 0.194 0.1922 0.19 0.2179 0.22 63.481
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.473 -1.672 0.199
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33 r_dihedral_angle_4_deg 19.558 r_dihedral_angle_3_deg 16.677 r_lrange_it 7.925 r_scangle_it 5.418 r_dihedral_angle_1_deg 5.38 r_mcangle_it 3.921 r_scbond_it 3.38 r_mcbond_it 2.587 r_angle_refined_deg 1.412
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33 r_dihedral_angle_4_deg 19.558 r_dihedral_angle_3_deg 16.677 r_lrange_it 7.925 r_scangle_it 5.418 r_dihedral_angle_1_deg 5.38 r_mcangle_it 3.921 r_scbond_it 3.38 r_mcbond_it 2.587 r_angle_refined_deg 1.412 r_nbtor_refined 0.285 r_symmetry_nbd_refined 0.199 r_nbd_refined 0.194 r_symmetry_xyhbond_nbd_refined 0.172 r_xyhbond_nbd_refined 0.142 r_metal_ion_refined 0.105 r_symmetry_metal_ion_refined 0.084 r_chiral_restr 0.055 r_bond_refined_d 0.014 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4448 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction CrystFEL data scaling PHASER phasing
