Navigation Tabs Serial Macromolecular Crystallography at ALBA Synchrotron Light Source - alpha Spectrin-SH3 domain
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4F17
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 277 Crystals were obtained by applying several concentration/dilution steps with milli-Q water inside standard Amicon Ultra 0.5 ml centrifugal filter (3 kDa cutoff). A crystalline slurry appeared when most citric acid buffer was removed
Crystal Properties Matthews coefficient Solvent content 2.82 56.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.2 α = 90 b = 42.6 β = 90 c = 50.8 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS 6M 2018-09-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97918 ALBA XALOC
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 LCP injection injection
Data Reduction Diffraction ID Frames Indexed Crystal Hits Frames Indexed Latices Merged 1
Injection Diffraction ID Description Flow Rate Injector Diameter Injection Power Injector Nozzle Filter Size Carrier Solvent 1 undefined (µl/min) undefined (µm)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 42.6 100 0.99 6.5 245 4682 50.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 100 0.204 0.3 57
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4F17 2.1 32.64 4110 503 99.14 0.1995 0.19443 0.2 0.23989 0.22 RANDOM 62.257
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.56 -3.4 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.821 r_dihedral_angle_4_deg 31.516 r_dihedral_angle_3_deg 13.862 r_long_range_B_other 10.916 r_long_range_B_refined 10.911 r_scangle_other 7.914 r_mcangle_other 6.822 r_mcangle_it 6.8 r_dihedral_angle_1_deg 6.554 r_scbond_it 5.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.821 r_dihedral_angle_4_deg 31.516 r_dihedral_angle_3_deg 13.862 r_long_range_B_other 10.916 r_long_range_B_refined 10.911 r_scangle_other 7.914 r_mcangle_other 6.822 r_mcangle_it 6.8 r_dihedral_angle_1_deg 6.554 r_scbond_it 5.071 r_scbond_other 5.039 r_mcbond_it 4.434 r_mcbond_other 4.381 r_angle_refined_deg 1.755 r_angle_other_deg 0.998 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 463 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction Aimless data scaling MOLREP phasing
