X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION293.150.1M Sodium acetate trihydrate,2M ammonium sulfate, pH 4.5
Crystal Properties
Matthews coefficientSolvent content
4.1770.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 213.3α = 90
b = 213.3β = 90
c = 245.84γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELBruker PHOTON II2022-02-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBEBRUKER D8 QUEST1.541

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.0247.29970.9885.740836
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.023.1496.40.7014.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.024738848198196.630.209050.207350.24335RANDOM35.564
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.39-0.69-1.394.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.723
r_dihedral_angle_4_deg19.899
r_dihedral_angle_3_deg15.394
r_dihedral_angle_1_deg7.213
r_long_range_B_refined6.467
r_long_range_B_other6.466
r_scangle_other4.388
r_mcangle_it3.551
r_mcangle_other3.551
r_scbond_it2.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.723
r_dihedral_angle_4_deg19.899
r_dihedral_angle_3_deg15.394
r_dihedral_angle_1_deg7.213
r_long_range_B_refined6.467
r_long_range_B_other6.466
r_scangle_other4.388
r_mcangle_it3.551
r_mcangle_other3.551
r_scbond_it2.71
r_scbond_other2.67
r_mcbond_it2.215
r_mcbond_other2.215
r_angle_refined_deg1.44
r_angle_other_deg1.189
r_chiral_restr0.055
r_bond_refined_d0.006
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8980
Nucleic Acid Atoms
Solvent Atoms18
Heterogen Atoms179

Software

Software
Software NamePurpose
PHENIXrefinement