SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N TROSY | 20 mM sodium phosphate, 0.1 % w/v sodium dodecyl sulfate, 2 mM beta-mercaptoethanol, 5 mM sodium azide | 100 % [U-2H] D2O | 0 | 7.0 | 1 atm | 298 | Bruker AVANCE III HD 900 |
| 3 | 3D HNCO | 20 mM sodium phosphate, 0.1 % w/v sodium dodecyl sulfate, 2 mM beta-mercaptoethanol, 5 mM sodium azide | 100 % [U-2H] D2O | 0 | 7.0 | 1 atm | 298 | Bruker AVANCE III HD 900 |
| 4 | 3D HN(CA)CO | 20 mM sodium phosphate, 0.1 % w/v sodium dodecyl sulfate, 2 mM beta-mercaptoethanol, 5 mM sodium azide | 100 % [U-2H] D2O | 0 | 7.0 | 1 atm | 298 | Bruker AVANCE III HD 900 |
| 5 | 3D HNCACB | 20 mM sodium phosphate, 0.1 % w/v sodium dodecyl sulfate, 2 mM beta-mercaptoethanol, 5 mM sodium azide | 100 % [U-2H] D2O | 0 | 7.0 | 1 atm | 298 | Bruker AVANCE III HD 900 |
| 2 | 3D HN(COCA)CB | 20 mM sodium phosphate, 0.1 % w/v sodium dodecyl sulfate, 2 mM beta-mercaptoethanol, 5 mM sodium azide | 100 % [U-2H] D2O | 0 | 7.0 | 1 atm | 298 | Bruker AVANCE III HD 900 |
| 6 | 3D HNCA | 20 mM sodium phosphate, 0.1 % w/v sodium dodecyl sulfate, 2 mM beta-mercaptoethanol, 5 mM sodium azide | 100 % [U-2H] D2O | 0 | 7.0 | 1 atm | 298 | Bruker AVANCE III HD 900 |
| 7 | 3D HN(CO)CA | 20 mM sodium phosphate, 0.1 % w/v sodium dodecyl sulfate, 2 mM beta-mercaptoethanol, 5 mM sodium azide | 100 % [U-2H] D2O | 0 | 7.0 | 1 atm | 298 | Bruker AVANCE III HD 900 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III HD | 900 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | selection based on rosetta chemical shif potential and total energy | Rosetta |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 500000 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 2 | peak picking | CcpNmr Analysis | Version 2.4.2 | Skinner SP, Fogh RH, Boucher W, Ragan TJ, Mureddu LG, and Vuister GW. |
| 3 | chemical shift assignment | CcpNmr Analysis Assign | Version 2.4.2 | Skinner SP, Fogh RH, Boucher W, Ragan TJ, Mureddu LG, and Vuister GW. |
| 4 | data analysis | CcpNmr Analysis | Version 2.4.2 | Skinner SP, Fogh RH, Boucher W, Ragan TJ, Mureddu LG, and Vuister GW. |
| 5 | chemical shift calculation | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
| 6 | structure calculation | Rosetta | 2020.08.61146 | Yarov-Yarovoy V, Schonbrun J, Baker D. |
| 7 | refinement | Rosetta | 2020.08.61146 | ivon LG, Moretti R, Baker D |
| 8 | geometry optimization | Rosetta | 2020.08.61146 | ivon LG, Moretti R, Baker D |
